Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi731g00020 ATGGCTTCCCGTTATGATTTAATCTGTAATGTGAATGGAGGCTTTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAAGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTGATTTGAAAGAAGTAACACAGAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACCGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTCGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTCCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCATATCTGTTGAAGGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGACATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGAAGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1554 0.3636 MASRYDLICNVNGGFEHKIWRIKVRVIRLWKSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGIQFSQLSDHASLTLEEEFLERGVYKSIADLKEVTQNSVFVTIGTVKDIESEYNRCYRACKKCSLGLKSDGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSPSFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSYLLKDNLSVSCDNGVDTPSPLLPTGKTTSNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGEEQSAKKLRKVIKEEKN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi731g00020 517 Pfam Replication factor-A C terminal domain 256 374 IPR013955 -
Sebi731g00020 517 PANTHER OS03G0429900 PROTEIN 250 378 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi731g00020 517 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Sebi731g00020 517 CDD RPA1_DBD_B_like 142 217 - -
Sebi731g00020 517 Gene3D - 239 399 IPR012340 -
Sebi731g00020 517 SUPERFAMILY Nucleic acid-binding proteins 17 115 IPR012340 -
Sebi731g00020 517 CDD RPA1_DBD_C 244 374 IPR047192 -
Sebi731g00020 517 CDD RPA1_DBD_A_like 21 109 - -
Sebi731g00020 517 SUPERFAMILY Nucleic acid-binding proteins 122 233 IPR012340 -
Sebi731g00020 517 Gene3D - 116 238 IPR012340 -
Sebi731g00020 517 Gene3D - 9 115 IPR012340 -
Sebi731g00020 517 SUPERFAMILY Nucleic acid-binding proteins 242 379 IPR012340 -
Sebi731g00020 517 Coils Coil 498 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi731g00020 Sebi-Chr731 347632 350212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi731g00020 20 339 Core DNA Replication Machinery Family AT2G06510 23.784 7.07e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi731g00020 - - adu:107477146 413.69