Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi731g00001 ATGGCATTATCTGGGTCTGCATCTTACTATTTGCAGAGAGGAATACATGGTTCTGGAAACCAACCTGAATTGCATAATTCACCTAGTAGCATCCGTTCACTGTCTAATCCTAACCTTCCATTTCAATCAAGCATTGGGGGTGGTACCATTGGATCCACATTGCCATTAGAATCATCTGGAATTTCATCTCAATGTATCAATGTTGGTGCTCCTTCCGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGCCTGATGGAGCTGTGTCATTGGCATTGACTCCAACACCAGCTACTCATCCTGGAACATTGACACAAGGCCAGAAACGGGGTAGAGGGCGCCCCCCTGGTTCTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATGTCATCACCATTGCAATTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAAGGACCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGCTCTTACTTGCTTGCTGATAGTGGTGGCTCCCGCAATCGAACGGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTGCTGATTGCAGCAAGTCTGGTTCAGGTGATAGTTGGGAGCTTCATGTGGGGTGGATCAAAGACAAAGAACAAGAAAAGGGAAGATTCTGAAGGCGCAGAAGTTGGTATAGAGTCAGATCATCAGGTTGTTCATAATCCAGTTGCAGTGAATAGCATTCCCCCAAATCAAAATCTTACTCCAACCTCATCTCTAAGTCCTTGGCCTGCATCGCGTCCATTGGACATGCGTAATTCCCATATTGACATTGATTTAATGCGCGGGTGA 927 0.4639 MALSGSASYYLQRGIHGSGNQPELHNSPSSIRSLSNPNLPFQSSIGGGTIGSTLPLESSGISSQCINVGAPSGEPVKRKRGRPRKYGPDGAVSLALTPTPATHPGTLTQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHVITIAIGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRSYLLADSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASLVQVIVGSFMWGGSKTKNKKREDSEGAEVGIESDHQVVHNPVAVNSIPPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi731g00001 308 MobiDBLite consensus disorder prediction 270 291 - -
Sebi731g00001 308 ProSiteProfiles PPC domain profile profile. 138 280 IPR005175 -
Sebi731g00001 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 235 IPR005175 -
Sebi731g00001 308 MobiDBLite consensus disorder prediction 65 127 - -
Sebi731g00001 308 CDD DUF296 143 235 IPR005175 -
Sebi731g00001 308 MobiDBLite consensus disorder prediction 270 289 - -
Sebi731g00001 308 MobiDBLite consensus disorder prediction 18 52 - -
Sebi731g00001 308 Gene3D - 144 263 - -
Sebi731g00001 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 238 - -
Sebi731g00001 308 SMART AT_hook_2 77 89 IPR017956 GO:0003677
Sebi731g00001 308 SMART AT_hook_2 112 124 IPR017956 GO:0003677
Sebi731g00001 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 186 282 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi731g00001 Sebi-Chr731 2955 8912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi731g00001 1 308 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.451 1.30e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi731g00001 - - gmx:100799791 485.723