Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi72g00054 ATGTGCCCAGAAGTGAATCCTCCAAAAAAAGGAGTGATCAACGTGGATGATGAGAGCCACAACAAGCTCATGATGGAGAGCGAAGAAAACGGAGTCTATGGTGCTGATTTCAGGGTGTGTCAGGATTGTGGTAACAGAGCAAAGAAAGATTGCCTTTATAGAAGATGCAGGACTTGTTGCAAAGGACGTGGATATGACTGCAACACTCACGTGAAGAGCACGTGGGTTCCCTCAATTCGCCGCCGGGAGCGTGAGATGGCGGTGGTTTCTGCCGCCGGTGGTGGTGATGGAGCTAAGAGGCCAAGACCTTTAGTGGGGTCATCACACAATGCCACTGCCACTTCTCATAGTTCTAACTCTAATGCTACCACTTGTCACCAAGATGCTGGCTTCAAAGAGTCTTTACCAGGTCATGTTCGTGCACCTGCTGTGTTTAGGTGCCATAGAGTCACAGCTATTGGCAATGGTGAAGATGAATTTGCCTACATGGCTACGGTTCATATAAGTGGCCATGTGTTCAAGGGGTTTCTTTATGATTATGGTGTTGATGGGAAAAATGCAATGCCTTGTGTTTCAGAATTGCAACTGGGAAATGGAAGGAATGGGGAATGTTCTTCTGCAATTGGGGTTCCAACCACTAATGCCTACCCTGCTTCTGCTAGCTGA 666 0.476 MCPEVNPPKKGVINVDDESHNKLMMESEENGVYGADFRVCQDCGNRAKKDCLYRRCRTCCKGRGYDCNTHVKSTWVPSIRRREREMAVVSAAGGGDGAKRPRPLVGSSHNATATSHSSNSNATTCHQDAGFKESLPGHVRAPAVFRCHRVTAIGNGEDEFAYMATVHISGHVFKGFLYDYGVDGKNAMPCVSELQLGNGRNGECSSAIGVPTTNAYPASAS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi72g00054 221 MobiDBLite consensus disorder prediction 107 123 - -
Sebi72g00054 221 NCBIfam LRP1 C-terminal domain 135 182 IPR006511 -
Sebi72g00054 221 NCBIfam putative zinc finger domain, LRP1 type 39 81 IPR006510 -
Sebi72g00054 221 MobiDBLite consensus disorder prediction 90 123 - -
Sebi72g00054 221 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 28 207 IPR007818 GO:0003700|GO:0006355
Sebi72g00054 221 Pfam Domain of unknown function (DUF702) 39 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi72g00054 Sebi-Chr72 1696588 1697547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi72g00054 40 207 C2H2 Transcription Factor Family AT5G12330 51.596 4.90e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sebi72g00054 DUF702 1.7e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi72g00054 - - gmx:100806835 345.125