Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi72g00042 ATGGCTAAGTTCTCCCACTCTCTCATTGAGGGACAGATTTACAAGATCACTAATTTTGGAATCCTGCGAAACAACAGAAAGTTTAGAACAGCTGTTCATGAGTTTAAGCTCATATTCAATGCCACTACCAGGCTGATTCCGTGCCAAAATGTTTCCATCTTATCATGTGGTTTTGCACTTGTGAAGAGTGATGCGATAAAGAAAACCAATGGCCGATCTGAATACCTAATAGATTTCATGGGCATCGTCACTGCCGTTTCAGAGGAAATCAACTTGAGCAAGGAGGGCAGGGAGACACGACTCATGCTAATTGATTTAGTGGATGAGATGGGACAAATACAGTTGGCTTTATTTGGAGAAATGATAGATGTGGTTGTTGGATATCTTGGTCTCCCTCGATGTGGTTTGCCTGTTCTTATATTACAATTAGCCAAGCTTAATCTTTACAAAGGGGAAGTTGGGATCCAGAATGTCATGAACACGTCAAAGGTTTATTGGAACCCGGATATGCCTGAGGCTCTAGAGTTTAGGAATGGTTTAGCTATTCACGAGAATGAAACTGATGTGGACATTCGAACTATATCTGAAACGAGGCGCCCTTCTTCAATGAAAGATGATTTCCTTAAATTATATCCAAAAAGGACTCTGGAACAACTGCACCAAATGGAAGAGGTTATCGAAGATGTATTTTGGTGGTATATGGCCCGTCCTTGCATGAAATCTGTATCCTATGATGATGGGGTTCCGTTTTGTGATGATTGTGGAGTCTATGTCATTGGTCTCACTCCTAGGTTCAAGCTGAAAATTGAGGTCTCTGATGCAATAGACACTGCTCAACTGATTTTGTTTGACTCAGAGTGTTATGCAATGCTTCACAAGTCCTGTCATGACATGTTAGATGAGATGAAGAGTGTAAAGAATTGTGATCATCCTTTGGATATCTCTAACCTGGTTGGGAGTGAGTTTCTCTTTCGAGTAGAGCGTAAGAATCATGCTTCATTCACCTTTGAGGAATGCTTCCGAGTTAAGAGGGTGTGCTCTGATCCAAGTATAATTGCTGATTATAAAATTGGAATGGATGAGGAAACTCCATTGAAGCTGAAGTTTGCTCCTTCATTTACCAAAATTATTGATGAGGAAGCGACCAACTGTGTGAAGGACATAACCCCTGAATTGACTTCTGTTGTGGCTGAGATTCAAGTTAGCCCTTTTACAACTATTCCGTCGCCCAGTGATGAGGAGGATGGTGGTAGTGTTAACAAGAGGGAGGCACAACAATCAACAGATGGACAATATGAGAGGAAGAAACAGCTCAGGCAGAAAGTGATCAAGGTTGAAAAGAATTGA 1347 0.4128 MAKFSHSLIEGQIYKITNFGILRNNRKFRTAVHEFKLIFNATTRLIPCQNVSILSCGFALVKSDAIKKTNGRSEYLIDFMGIVTAVSEEINLSKEGRETRLMLIDLVDEMGQIQLALFGEMIDVVVGYLGLPRCGLPVLILQLAKLNLYKGEVGIQNVMNTSKVYWNPDMPEALEFRNGLAIHENETDVDIRTISETRRPSSMKDDFLKLYPKRTLEQLHQMEEVIEDVFWWYMARPCMKSVSYDDGVPFCDDCGVYVIGLTPRFKLKIEVSDAIDTAQLILFDSECYAMLHKSCHDMLDEMKSVKNCDHPLDISNLVGSEFLFRVERKNHASFTFEECFRVKRVCSDPSIIADYKIGMDEETPLKLKFAPSFTKIIDEEATNCVKDITPELTSVVAEIQVSPFTTIPSPSDEEDGGSVNKREAQQSTDGQYERKKQLRQKVIKVEKN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi72g00042 448 CDD RPA1_DBD_B_like 78 177 - -
Sebi72g00042 448 MobiDBLite consensus disorder prediction 427 448 - -
Sebi72g00042 448 Gene3D - 1 50 IPR012340 -
Sebi72g00042 448 SUPERFAMILY Nucleic acid-binding proteins 214 346 IPR012340 -
Sebi72g00042 448 Gene3D - 189 348 IPR012340 -
Sebi72g00042 448 Pfam Domain of unknown function DUF223 3 74 IPR003871 -
Sebi72g00042 448 MobiDBLite consensus disorder prediction 403 448 - -
Sebi72g00042 448 Gene3D - 53 188 IPR012340 -
Sebi72g00042 448 SUPERFAMILY Nucleic acid-binding proteins 62 181 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi72g00042 Sebi-Chr72 1303803 1306052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi72g00042 3 304 Core DNA Replication Machinery Family AT5G08020 20.882 1.69e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi72g00042 - - lja:Lj1g3v3385890.1 286.574