Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi72g00033 ATGCTTTCTTATCCAAACTATTATAGGCAGACTCATGGAGCAAATAAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGCTGCAAGCTCCATTCCCGTGTGAGCGATTCTTCAAGGAGAAAACTCTTTGAACTTCATGAAATCTTCAAGACAATACCTGGTGTAGGAAAACAGCATAAGTTTATTAGTTCCAAGATAGTACCTATGGATAATAACACTTGCGGATCTGGGATTTGGGAGATATCTGATGATATTTTAACTAAAATTATAGCTTCCTTGGGCCCGATGGACCTCACTAAGGTTTCTGCAACGTGTCGTCATCTAAGATCCTTGGCTGCATCAGTAATGCCTTGCACAAAGTTAAATCTGTATCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAACTTTTGCCACATCCTTTATATGTAGCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATAGTCACTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATTGTGAAGACGCAAAGTACATTGGCCAACCCACCAAATGGAGCACAAGTAGTCTGGTGTCAACATAATGGTAACAAGAAATGTGGCTATTATGAGATCAGTGGTAATAACGTTACTGGTTGTACTATCTCGGGTAAGAGGGATGTGTGCCAAGATACCAGTAGAAATAATGAGAACCATGATTACCCCTCCAAAAGAGCTAGATTGATGGATCCTGGTCAGAAAATCACTAAACTTCATGGTTCTTGTTCTGGAGAAGAAAACAAATCACCAGTAGATGCTAGCTTTGAGGAATCTATGCCTGCAAGTCGGTGCACTAGGAGCTTGAGTCGCATAAAAAAGAATCTAAATTTCACATATGAAGAAGAAGCAATGGTGTTCGATGGAAGAAAAGTCGGTGAAAGATCAATAAAAGCAAAGCAAGCATCAGATGTTGCATCCCATGGATCTGAAAACAAGCTAGTTGATACCTCACATGGATGTGGACAGAGTCACAAGTGGCCTAGGAAGAATAAAGTTGATAGTTTGGAATACAACGATACATGGATTCAGTGTGATGCTTGTCGCAAGTGGCGAAAGCTCTCAGACAGTAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTATATCAGAGTTGTAGTGTCCCTGAACAATATTTTCAGAATAGCTGGAAGATAACATACATGCCAGGATTTTACTTGAAAGGAACTTCTGGGGGTGACAAACAAAATGTTTCATTTTTCATTAGTGTGCTCAAGGAGCACTACTCATTGATAAATTCTCAGACTAGGAAAGCCCTTACTTGGTTGGCTAAAATTTCAATGGACAAGCTTGCATTAATGGAAACAAATGGCATACGGGGTCCTATTTTAAACAATTGCACTGTGTCTAATGGGCATTTTAATCCATTCCACAAAATATTTCTAGCATTTGGCCTCATAAAGAGAGTTGAGAAAGGTGTATGCAGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCCGTGAGCCATTGGATTTTGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACCTGGTTGATCATTGGAAATCACAAATTGAAAAGCATGTTAGGCCTGGTCAATTGCGGGTTTATGCTTGGACTGATCATCGGAAGCCATCTGCACACTGTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTAAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTCTGATGCAAGTGCACTGGTTTAGAATAATTTTAGATGAAGGGCATACCCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGACGGCTACAAATCGATGGATACTAACAGGAACTCCAACACCTAACACCCCTAACAGCCAACTTTCACATCTACAACCTTTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCCGAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGTCGGTCTCGTCTGCTGCATTTACTTCACAAATGCATGATTAGTGCAAGAAAAATAGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTTCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTACTCACAGTTCGGCGTAATATATTGATGGCTGATTGGAACGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGCAGTGCAACTATAAAAAATGTTAGACTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATGTTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTAGATCCTACTTCAGGAGAGTATGCCTCCATAAGATACAATCTCCTGTTTGGTGGTCAATGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTCTCATTACACCATGTCGGCATCTATTGTGCCTGGATTGTGTTTCAATAGACAATACGATGTGTACATATCCTGGCTGCGGTAACTTATATGAGATGCAGAGTCCTGATACAATGGCACGACCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGCAGGGTTGAAAGCTTTGCAAGGAACCAGTGAAGAGATGAGCTGCTATACAAATAATAGCAATGATGAGATGCATACCAAGAATAGTTTCCCTTTTCATACGAGAGATGTGAAATCATCATTCCAGGAATGTTCTATAAGTAGCACTAAGGCCAATTTTGTTCCTGAAAAAGTTCTGATATTTTCTCAATTTCTTGAACATATACATGTCATTGAACAGCAGTTGACTATTAATGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCATTAGCCATGTTTCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGCTTTGTCACACATGTATTCTTAATGGAGCCAATTTGGGACAGAAGTATGGAAGAGCAAGTAATTAGTCGTGCCCATCGGATGGGTGCTTCTCGCCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCACATGCTAGAATTTTTACAGGATGCTGATAAATGCAGAAGATTTCCAAGTAAAGATGTTGACAAATCTGAAGATGATAGTGGGGGGCGTGGATATCGATCATTGCATGATTTTGCGGAAAGCAGAAACATAAATGCAAAGGAAAGATGA 3450 0.4078 MLSYPNYYRQTHGANKSIWNLSDCHVLGCKLHSRVSDSSRRKLFELHEIFKTIPGVGKQHKFISSKIVPMDNNTCGSGIWEISDDILTKIIASLGPMDLTKVSATCRHLRSLAASVMPCTKLNLYPHQQAAVEWMLHRERNAELLPHPLYVALSTDDGFSFHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIVKTQSTLANPPNGAQVVWCQHNGNKKCGYYEISGNNVTGCTISGKRDVCQDTSRNNENHDYPSKRARLMDPGQKITKLHGSCSGEENKSPVDASFEESMPASRCTRSLSRIKKNLNFTYEEEAMVFDGRKVGERSIKAKQASDVASHGSENKLVDTSHGCGQSHKWPRKNKVDSLEYNDTWIQCDACRKWRKLSDSSMANSSAAWFCSMNTDPLYQSCSVPEQYFQNSWKITYMPGFYLKGTSGGDKQNVSFFISVLKEHYSLINSQTRKALTWLAKISMDKLALMETNGIRGPILNNCTVSNGHFNPFHKIFLAFGLIKRVEKGVCRWYYPQNLNNLTFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKSQIEKHVRPGQLRVYAWTDHRKPSAHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLTATNRWILTGTPTPNTPNSQLSHLQPLLRFLHEEAYGLNPKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKIDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDVQETMDMLVQSGLDPTSGEYASIRYNLLFGGQCVRCKEWCRLPLITPCRHLLCLDCVSIDNTMCTYPGCGNLYEMQSPDTMARPENPNPKWPVPKDLIELQPSYKQAGLKALQGTSEEMSCYTNNSNDEMHTKNSFPFHTRDVKSSFQECSISSTKANFVPEKVLIFSQFLEHIHVIEQQLTINGIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEHMLEFLQDADKCRRFPSKDVDKSEDDSGGRGYRSLHDFAESRNINAKER 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi72g00033 1149 SMART fbox_2 82 122 IPR001810 GO:0005515
Sebi72g00033 1149 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 976 1128 IPR001650 -
Sebi72g00033 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 1122 IPR027417 -
Sebi72g00033 1149 SMART ultradead3 120 719 IPR014001 -
Sebi72g00033 1149 Pfam SNF2-related domain 127 793 IPR000330 GO:0005524|GO:0140658
Sebi72g00033 1149 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 97 1107 - -
Sebi72g00033 1149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 530 695 IPR014001 -
Sebi72g00033 1149 Pfam Helicase conserved C-terminal domain 983 1082 IPR001650 -
Sebi72g00033 1149 SMART helicmild6 1000 1082 IPR001650 -
Sebi72g00033 1149 ProSitePatterns Zinc finger RING-type signature. 873 882 IPR017907 -
Sebi72g00033 1149 Gene3D - 941 1140 IPR027417 -
Sebi72g00033 1149 SUPERFAMILY F-box domain 72 115 IPR036047 GO:0005515
Sebi72g00033 1149 Pfam F-box domain 82 116 IPR001810 GO:0005515
Sebi72g00033 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 734 IPR027417 -
Sebi72g00033 1149 Gene3D - 376 430 - -
Sebi72g00033 1149 MobiDBLite consensus disorder prediction 340 369 - -
Sebi72g00033 1149 CDD DEXDc_SHPRH-like 559 736 - -
Sebi72g00033 1149 CDD SF2_C_SNF 987 1092 - -
Sebi72g00033 1149 MobiDBLite consensus disorder prediction 344 360 - -
Sebi72g00033 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 206 IPR027417 -
Sebi72g00033 1149 MobiDBLite consensus disorder prediction 1116 1149 - -
Sebi72g00033 1149 CDD F-box_SF 81 113 - -
Sebi72g00033 1149 Pfam CW-type Zinc Finger 382 425 IPR011124 GO:0008270
Sebi72g00033 1149 Gene3D - 544 739 IPR038718 -
Sebi72g00033 1149 ProSiteProfiles Zinc finger CW-type profile. 377 428 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi72g00033 Sebi-Chr72 1042351 1046960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi72g00033 565 1102 RAD5 or RAD16-like Gene Family AT5G22750 25.952 1.53e-41 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi72g00033 SNF2_N 5.2e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi72g00033 - - gmx:100803102 1934.84