Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi72g00010 ATGCGTGAGGCAGTATGTTTGGACTTGATGGATCAGTACCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAGTCACGCTCCGTTCAAAATGAGGTTGGCAGTTTGTTCACCCGTGTCTTGTTCTTGTCATAAGATCAATGTTATTTTCAAGTTACAGAAGAAAGGACCACCTGACTCGTCACCTTCTACTGCATCAGGGAAGACTTTCACATGTCCTGTTGAGAATTGCAACCTTGAATTCCTCTTCCAAAGCAATTTGAAAAGACATAAATCGGCTTGGGAAAGGTTTTCAGATTTGCATCAAAGCTACAAAAGCATGAAGATTTTCATAGTAAAAATCGTCAACTTACTGCATCAAGGGAAGACTCTCACATGTCCTGTTGAGAATTACAACCTTGAATTCTCTCTCCAAAGCAATTTGAAAAGACATGTTAACGAGTTCCATGATGAAAATTCTAACCCTAGTAATGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAATCGGCTGTGGAAAGGTTTTCAGATTTGCATCAAAGCTACAAAAGCATGAAGATTCTCATGTTAAGCTAGAATCAGTAGATGTAGTTTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGGCCTTAGAGCCCATGTTAACTCCTGCCATCAATATTTCATCAGAGGCATTTCAATGTGAATTAAGGGTTGTGGCTGCACATTCTCAAAAATCTAATCTTAATAAACATGAGAAGGCTGTGCACTTCAAAGAAAAACCTTTTGTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACACGTCAAGGCCAAGGGGAGGGAAGAAGAGAACGTGTCCCCTACTGTTGAAATGTTAGTTAGGAAGAGAGTTACACCACCTAGTCAATTGGAGAAACTGGTTTGCTCATGCAGGATAGTGACTAAAGATGCATTGAGCTTTGTATGCGCCTCAACCCTGCCCCTAATAGTAGGCAAAGTGATGATCTCGAGTCGAGTTATAGTGTGTGAGGATAAGTCTCGATGGATTCTCGGTATGCTTCCGGGGGAGAACATGGTGCTTCATATTCTCACTGTGTGGTGGGCCTGGCGCTGGAGAAACAACCTGGTGTTAGATCAGTAA 1146 0.425 MREAVCLDLMDQYQVGRPPVKLHQGCLSHAPFKMRLAVCSPVSCSCHKINVIFKLQKKGPPDSSPSTASGKTFTCPVENCNLEFLFQSNLKRHKSAWERFSDLHQSYKSMKIFIVKIVNLLHQGKTLTCPVENYNLEFSLQSNLKRHVNEFHDENSNPSNVESQKQYVCPEIGCGKVFRFASKLQKHEDSHVKLESVDVVCLEPGCMKHFTNAQALEPMLTPAINISSEAFQCELRVVAAHSQKSNLNKHEKAVHFKEKPFVCGFPDCGMRFAYKHVKAKGREEENVSPTVEMLVRKRVTPPSQLEKLVCSCRIVTKDALSFVCASTLPLIVGKVMISSRVIVCEDKSRWILGMLPGENMVLHILTVWWAWRWRNNLVLDQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi72g00010 381 PANTHER ZINC FINGER PROTEIN 231 286 - -
Sebi72g00010 381 Gene3D Classic Zinc Finger 52 156 - -
Sebi72g00010 381 ProSitePatterns Zinc finger C2H2 type domain signature. 169 191 IPR013087 -
Sebi72g00010 381 SUPERFAMILY beta-beta-alpha zinc fingers 241 276 IPR036236 -
Sebi72g00010 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 260 IPR013087 -
Sebi72g00010 381 SUPERFAMILY beta-beta-alpha zinc fingers 164 191 IPR036236 -
Sebi72g00010 381 Gene3D Classic Zinc Finger 197 285 - -
Sebi72g00010 381 Gene3D Classic Zinc Finger 163 191 - -
Sebi72g00010 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 196 IPR013087 -
Sebi72g00010 381 SMART c2h2final6 73 95 IPR013087 -
Sebi72g00010 381 SMART c2h2final6 127 152 IPR013087 -
Sebi72g00010 381 SMART c2h2final6 167 191 IPR013087 -
Sebi72g00010 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 109 IPR013087 -
Sebi72g00010 381 Pfam Zinc finger, C2H2 type 167 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi72g00010 Sebi-Chr72 192139 194070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi72g00010 71 280 C2H2 Transcription Factor Family AT1G72050 33.218 7.88e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi72g00010 zf-C2H2 0.00053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi72g00010 K09191 - qsa:O6P43_029707 232.261