Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi728g00026 ATGGTTGATGTTTTCTTAATACATTTTAGATCCAGACCTGCTAGGTGTTATCGGGATTGGCGGATAAAAAACAAGCCATATCCCAAATCACACTTCTGTCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAAAAAGGTGTTGATGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGCTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGGCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTGCCTTTGGAAAGCCTCAGGGTACTTGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTTCTGTCCGTTGTAAGGACAACAACAGCCATCATGCACAGGAAGCCCTACGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTACTGATTATCTCAAGTACAAGTCAGAAAACAAAATTGTCCCTGATGGTGTGGATGCAAAGGTAAATGTGAAGCTGCATCATATTTGA 567 0.4233 MVDVFLIHFRSRPARCYRDWRIKNKPYPKSHFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENASSEALEAARIACNKYMAKFAGKDAFHLRVPLESLRVLVLEWPLVRSFFSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENKIVPDGVDAKVNVKLHHI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi728g00026 188 PIRSF RPL10a_RPL10e 113 164 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sebi728g00026 188 PIRSF RPL10a_RPL10e 9 110 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sebi728g00026 188 Gene3D Ribosomal protein L10e/L16 10 109 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sebi728g00026 188 Gene3D Ribosomal protein L10e/L16 113 160 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sebi728g00026 188 SUPERFAMILY Ribosomal protein L16p/L10e 12 155 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sebi728g00026 188 PANTHER 60S RIBOSOMAL PROTEIN L10 11 109 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sebi728g00026 188 Pfam Ribosomal protein L16p/L10e 22 99 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sebi728g00026 188 CDD Ribosomal_L16_L10e 51 148 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sebi728g00026 188 Gene3D - 161 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi728g00026 Sebi-Chr728 466395 467544 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi728g00026 12 180 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 65.990 3.96e-85 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi728g00026 K02866 - gmx:100305619 280.411