Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi728g00020 ATGACGATATATTACACGTATAATCGGTTTAGGGTTTCGTTCTTGGACATTTCGTGCCTCAACACCTCGCGTTGTGCAGAGAGACATTGCCATGGGGAGGAGTGTTATCGGCAGATAAAAAACAAGCCATATCCCAAATCACGCTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAAAAAGGTGTTGACGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGTCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCCTTTGGAAAGCCTCAGGGTACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGCCATCATGCACAGGAAGCCCTACGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTACTGATTATCTTAAGTACAAGTCAGAAAACAGAATTCTCCCTGATGGTGTGAATGCAAAGCTTCTTGGAAATCATGGACCATTGGCAAATCGTCAACCTGGAAGAGCCTTTCTCTCAAGTGCTACTGCGTAG 747 0.4458 MTIYYTYNRFRVSFLDISCLNTSRCAERHCHGEECYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRILPDGVNAKLLGNHGPLANRQPGRAFLSSATA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi728g00020 248 Gene3D Ribosomal protein L10e/L16 31 244 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sebi728g00020 248 FunFam 60S ribosomal protein L10, putative 202 244 - -
Sebi728g00020 248 SUPERFAMILY Ribosomal protein L16p/L10e 34 200 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sebi728g00020 248 PANTHER 60S RIBOSOMAL PROTEIN L10 34 240 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sebi728g00020 248 ProSitePatterns Ribosomal protein L10e signature. 135 156 IPR018255 GO:0003735|GO:0005840|GO:0006412
Sebi728g00020 248 CDD Ribosomal_L16_L10e 68 193 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sebi728g00020 248 Pfam Ribosomal protein L16p/L10e 39 193 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sebi728g00020 248 FunFam 60S ribosomal protein L10 29 233 - -
Sebi728g00020 248 NCBIfam 50S ribosomal protein L16 33 201 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi728g00020 Sebi-Chr728 440695 442266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi728g00020 35 247 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.385 7.64e-140 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi728g00020 K02866 - gmx:100815571 432.18