Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi727g00023 ATGGCGTATGTCAAGGCTCAGAAATCAAAGGCGTACTTTAAGAGATATCAAGTGAAGTTTAAGAGAAGAAGGGAGGGAAAGACTGATTACCGAGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAGTACAACACCCCAAAATACCGATTTGTGGTTCGATTTACGAACAAGGATATCATTGCACAAATAATATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCAGCATATGCCCATGAACTGCCACACTATGGTCTTGAAGTAGGCCTTACAAACTATGCGGCAGCTTACTGCACTGGACTTCTCTTGGCTCGTCGCGTCCTTAAAAGGCTTGAAATGGATGAGGAGTATGAGGGGAATGTGGAGGCTACTGGAGAGGATTTTTCAGTGGAGCCGGCTGATACCAGGAGACCATTCCGTGCTCTTCTTGATGTTGGTCTAATTAGGACCACAACTGGCAATCGTGTCTTTGGTGCACTTAAGGGAGCTCTCGATGGGGGCTTGGATATTCCTCACAGTGACAAAAGATTTGCTGGTTTTGATAAGGAGAAGAAGGATCTTGATGCTGAGGTTCACCGCAAATACATCTTTGGTGGACATGTTGCTACCTATATGAAGGCATGGACAAAGACTTTATTTAATCCAACTGCAAATGAAATCAGAGAAGAAGCCACCAAAGGAACACAAGAGGTACAACCTGAAGACGTTACCTATGAGGGAGGAAGGCTAAGTTGA 741 0.444 MAYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIISASIAGDIVLAAAYAHELPHYGLEVGLTNYAAAYCTGLLLARRVLKRLEMDEEYEGNVEATGEDFSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKDLDAEVHRKYIFGGHVATYMKAWTKTLFNPTANEIREEATKGTQEVQPEDVTYEGGRLS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi727g00023 246 CDD Ribosomal_L18_L5e 41 170 - -
Sebi727g00023 246 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi727g00023 246 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi727g00023 246 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi727g00023 246 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi727g00023 246 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi727g00023 246 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi727g00023 246 MobiDBLite consensus disorder prediction 226 246 - -
Sebi727g00023 246 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 209 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi727g00023 246 Hamap 50S ribosomal protein L18 [rplR]. 14 237 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi727g00023 246 FunFam Uncharacterized protein 1 145 - -
Sebi727g00023 246 Gene3D - 1 241 - -
Sebi727g00023 246 SUPERFAMILY Translational machinery components 11 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi727g00023 Sebi-Chr727 468853 470944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi727g00023 1 208 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 87.981 5.26e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi727g00023 K02932 - gmx:100818819 390.578