Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi726g00017 ATGTTTAACGGTATGATGGATCCTGAATTGATCAGGATCGCTCAGGAACAGATGAGTCGCATGTCACCGGCTGAATTAGCTCGGATCCAACAACAGATGATGTCTAACCCAGAGCTGATGAGGATGGCCTCTGAAAGCATGAAGAACATGAACTCTGAAGACTTCAAACTTGCTGCTGAACAGTTAAAGCATACCCGTCCCGAAGAAATGGCTGAGATTGGTCAGAAGATGGCTAATGCAACACCTGATGAAGTAGCAGCTATGCGTGCCCGTGTTGATGCTCAGATCAAATATCAATTGAATGCAGCTGAGATGTTGAAGAAGCAGGGAAATGAACTTCACAATCAAGGAAAGTTCGATGATGCTTTGGAGAAGTATATGCGTGCTAAGGAAAACATTAAAGACATTCCATCTTCTCAAAGTAGAAAGCTCCTTTTGGCGTGCTCACTTAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGCCTTCTTAAGGATGCTGTTACTGATTTGAGCAAGGCCCTTGAAGTTTCCCCTGATGATGATACAATTGCAGAGCTTTTACGGGACACTGAGGAAAAGTTGAGTAAGGGCAATGGTGATTGTGGACCTGGAAGATTAGTAATTGAGGAAATAACTGAAGAAGACGAGAATGTGCCTTCTGGAAACAATAGAAGCTCTTCTTTGGAACAAACAGTGGTTCAACCAAAAAAATCCGGTGACTCCTCTAAGAGTTGCAGTATAGCTAACAATGGAAATCCAAAAACAAATGCAGACAGTTTAAATACATTGAAAAAAGATCCAGAAGCTCTCAGGTCATTCCAAAACTTCATTTCAAATGCTGATCCTGCCACTCTGGCTTCTTTGAACACTGGACATCCCCAAGATGTGTCCCCAGATATGATTAAAGCTACCTCAGATATGATTGGCAAGATGTCACCTGAGGAACTTCAAAAAATGCTTGACATGGCATCTTCATTTCAAGGGGACAACCCATTTTTCAGAGGAGGTTCCCCTGATTCTCCTTTCAACCCTGGATCAATTCCTCCTAACGTGACACCTGACATGTTTAAAACAGCGAGTGATATGATAAGTAAAATGCCAGCAGATGAGCTTAAGAAGATGTTTGAAATGGCATCCTTACTGAAAGGGAAAGAATCGATTCCATCAACAGCAGCCGTAGACAAGAATGAAAGAAATATTTCCCAGTCAAATTTCCCATCCTCAAGTACCAGTGGAACTCATGCTTTTGGAGAATCAAGTTCTTCTCACAATGCATTTTCAAATATGAGAAATGCTTCTCAGTCAAACTTCCCTTCCTCGAGTACAGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTCACTTCAATGGTTAAAAATATGAGTCCGGAAATGATGGCAAACATGGGAGAACAATTTGGTTTCAAGCTTTCACCCGAAGACGCAGCAAAAGCTCAGCAAGCCATGTCATCCATGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCGGACAGAATTCAAAGAGGAGTGGAAGGTGTTAAAAAGACAAAGAACTGGCTGCTAGGGAAACCAGGCATGGTCTTTGCAATATGCATGCTCATCTTGGCTATAATTCTTCACCGCCAAGTAACAAAGGAGAGAGGAGTGGACATACCATTAGTTATCTGGAAAGCAATGCCAAAATGGCATCTCATCAGATATGTCCAAATTGAGGATGTGATTGGCACTTCCTTTCTGATGGTGTTGATGACTTCGAAGACTGCATCGAATCCAGGGAGAACATTTTGGAGGTGCCATAATTGGAATAAGAAGGGATTATGTGATTACCTCGAAATGTGGAGGATTGAGGTTGTAATGGCCAAGAGCCAAGAGCTTGCAGACATGAAGAGGAAAATTGGAAAGCTCCAAAGGAAGATTAATGATGAGAGGAAATGA 2058 0.4189 MFNGMMDPELIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMNSEDFKLAAEQLKHTRPEEMAEIGQKMANATPDEVAAMRARVDAQIKYQLNAAEMLKKQGNELHNQGKFDDALEKYMRAKENIKDIPSSQSRKLLLACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVTDLSKALEVSPDDDTIAELLRDTEEKLSKGNGDCGPGRLVIEEITEEDENVPSGNNRSSSLEQTVVQPKKSGDSSKSCSIANNGNPKTNADSLNTLKKDPEALRSFQNFISNADPATLASLNTGHPQDVSPDMIKATSDMIGKMSPEELQKMLDMASSFQGDNPFFRGGSPDSPFNPGSIPPNVTPDMFKTASDMISKMPADELKKMFEMASLLKGKESIPSTAAVDKNERNISQSNFPSSSTSGTHAFGESSSSHNAFSNMRNASQSNFPSSSTDLQEQMRNQMKDPAMRQMFTSMVKNMSPEMMANMGEQFGFKLSPEDAAKAQQAMSSMSPESLDKMMLWADRIQRGVEGVKKTKNWLLGKPGMVFAICMLILAIILHRQVTKERGVDIPLVIWKAMPKWHLIRYVQIEDVIGTSFLMVLMTSKTASNPGRTFWRCHNWNKKGLCDYLEMWRIEVVMAKSQELADMKRKIGKLQRKINDERK 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi726g00017 685 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Sebi726g00017 685 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 363 - -
Sebi726g00017 685 SMART tpr_5 180 213 IPR019734 GO:0005515
Sebi726g00017 685 SMART tpr_5 103 136 IPR019734 GO:0005515
Sebi726g00017 685 SMART tpr_5 146 179 IPR019734 GO:0005515
Sebi726g00017 685 MobiDBLite consensus disorder prediction 251 294 - -
Sebi726g00017 685 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
Sebi726g00017 685 MobiDBLite consensus disorder prediction 245 294 - -
Sebi726g00017 685 MobiDBLite consensus disorder prediction 423 480 - -
Sebi726g00017 685 Coils Coil 659 679 - -
Sebi726g00017 685 MobiDBLite consensus disorder prediction 425 480 - -
Sebi726g00017 685 SUPERFAMILY TPR-like 95 228 IPR011990 GO:0005515
Sebi726g00017 685 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Sebi726g00017 685 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi726g00017 Sebi-Chr726 251074 257498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi726g00017 93 231 Calmodulin-binding Proteins AT5G48570 33.793 8.67e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi726g00017 - - gmx:100800315 973