Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi725g00001 ATGGCTTCTTCTTCCTTAAAGGTGCTCAGTCGAAGAAGGACCCATCCTCCCAAATCTTCATGCCCTAACGACGTCGTCTGCGAGGAATGCGGCTCCGGTCACTCCCCGGCCAAGTTGCTTCTGTGCGACAAATGCGACCGAGGTTACCATCTATTCTGCCTCAGACCCATCCTTCCTTCTGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCCACGACACCAACCCCAAACCCAAATCTTTTCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATTCAACGTTCCTCGGTTGCATCCCTGATTTCGAATCAAGACACCCGGAAGAAGCGAAAGCGGTGTAGTAGCTTAGTGGTGTCCAAAAAGAAGAGGAAACTGTTGCCCTTCATCCCAAGTGAGGATCCTAAAAGGAGATTAGAACAGATGGCATCACTCGCGACGGCGCTGACTGCGACCAAAACAGAATTCAGCAATGAGCTTAACTACATGCCTGGAATGGCCCCAAGGTCTGCTAATCGTCCTGCTCTGGAGCATGGTGGAATGCAGGTCTTATCGAAAGAAGATACCGAAACTGTAAACTTGTGCAAAAGTATGATTGAAAGAGGAGAATGGCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGATTCACTGTAGAAGCGGATAGATCCATAAGAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGATTTTTTAAAGAATCGGGAAAATGATGATGGGGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCCCAAACGCTTGTCATATGTCCCGATAAACGGAGTAACATAGCACGTTTCATTAATGGCATAAATAATCACACACCGGAAGGGAAAAAGAAGCAGAACTTAAAATGCGTGAGATTTGACGTCGATGGTGAATGTCGGGTTCTTTTAATTGCCAATAGAGATATAACAAAGGGGGAAAGGTTGTACTATGACTACAATGGATATGAACATGAATATCCAACTGAACATTTTGTCTAA 1026 0.4483 MASSSLKVLSRRRTHPPKSSCPNDVVCEECGSGHSPAKLLLCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSHDTNPKPKSFPLVQTKIIDFFRIQRSSVASLISNQDTRKKRKRCSSLVVSKKKRKLLPFIPSEDPKRRLEQMASLATALTATKTEFSNELNYMPGMAPRSANRPALEHGGMQVLSKEDTETVNLCKSMIERGEWPPLMVVFDPLEGFTVEADRSIRDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVDGECRVLLIANRDITKGERLYYDYNGYEHEYPTEHFV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi725g00001 341 SUPERFAMILY FYVE/PHD zinc finger 17 79 IPR011011 -
Sebi725g00001 341 Pfam PHD-finger 27 73 IPR019787 -
Sebi725g00001 341 ProSiteProfiles SET domain profile. 207 329 IPR001214 GO:0005515
Sebi725g00001 341 Pfam SET domain 100 329 IPR001214 GO:0005515
Sebi725g00001 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Sebi725g00001 341 Gene3D SET domain 113 341 IPR046341 -
Sebi725g00001 341 FunFam Histone-lysine N-methyltransferase ATXR5 112 341 - -
Sebi725g00001 341 SUPERFAMILY SET domain 199 329 IPR046341 -
Sebi725g00001 341 SMART PHD_3 26 72 IPR001965 -
Sebi725g00001 341 MobiDBLite consensus disorder prediction 1 21 - -
Sebi725g00001 341 CDD SET_ATXR5_6-like 204 341 - -
Sebi725g00001 341 CDD PHD_RSF1 27 71 - -
Sebi725g00001 341 ProSiteProfiles Zinc finger PHD-type profile. 24 74 IPR019787 -
Sebi725g00001 341 ProSitePatterns Zinc finger PHD-type signature. 27 71 IPR019786 -
Sebi725g00001 341 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 101 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi725g00001 Sebi-Chr725 403300 405521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi725g00001 23 71 C2H2 Transcription Factor Family AT3G01460 46.939 1.91e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi725g00001 PHD 5.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi725g00001 K24406 - gmx:100775247 575.089