Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi723g00006 ATGTCTTCCTTAAAGGCCTACGGTAAAATTGATGAAGCAGACCAAGCAATGCTTGAAGTTCGTAGGAAAACCCGAAAGCGAATCACCATCATAAGCTTGTCCACAATAGTCCTAATTGGTGTTGTTTGTGCTGCTGTTTTTGGAACCATTGCTCATAATAATGGCCATGATGATGATGACAACAACAATGCTCAATCTCTTTCAAGTAATTCTGTGGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGACTCATGCTATAGCAGCCTTAGTCCTCTTGTGCATTCGGGTCATGTTCAACCTCAGGAGCTCTTCTTGTTGTCCATCCAAGTGGCCTTCAATGAGGTTTCAAGAGCTGTTGAGTATTTCTCTGAGCAGGGAGATTTTAAGGGGTTGAGTGTGGATAATAGGACCAAGGAAGCTTTGAAAAATTGTGGGGATCTTTTGGGTCTTGCTGCTGATCATTTGAATAGCTCTTTGTCTTCTGGGGAAAAGTCTTCATTGCTTGATGTTTTGGAGGATCTTAAAACTTGGTTGAGTGCTTCAGGTACATACCAGCAAACTTGCATTGATGGCTTTGATGAGGCAGGAGAAGCATTGAAGTCCAGTGTTGTAAGCAATCTCAAAAATTCTACAGAGTTCACCAGTAACAGTCTTGCCATCATTACTTGGCTTAACAATGCTGCAACCACAGTGAACTTGAGGCGCTTGTTGACTTTGCCTAATCAGAATGAAGAACCAAACTGGCTTCATTCTAAAGACCGGAAGCTACTTCAAACAGATGATTTGAAGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATACAAAACAATCTCTGATGCACTTAAACATGTCCCTGAGAAAAGTGACAAGAGAACTGTAATCTATGTGAAGAGAGGGACTTACTATGAAAATGTGAGAGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAATGCAACAATTGTATCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACATTTGCTGTATTTGGGAAGAATTTCATGGCTAAGGATATGGGATTTCGTAACACAGCTGGTGCAGAGAAGCACCAAGCAGTGGCACTAATGACAAGCGCTGATCAAGCTATTTTCTATAGGTGTCAGATTGATGCATATCAGGACACTCTCTATGCTCATTCAAATCGCCAATTCTATAGGGAATGCAACATCTATGGAACAGTTGATTTCATTTTTGGCAACTCTGCAGTTGTCTTACAAAACTGCAACATTTTGCCAAAGTTGCCTATGCAGGGCCAACAGAACACAATCACAGCACAAGGCAAAACTGACCCTAACATGAACACAGGAATTTCAATTCAAAATTGTAACATTTCACCCTTTGGGAACTTGAGTTCTGTCCAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTTTATGCAATCCACATTGGGAAGTTTCATTAACCCAAATGGATGGTTACCTTGGGTAGGGAACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTCAAGTGGAAGGGTGTGAGAAGCATTACCAAAAAACAAGCTAGCAAGTTTACAGTGAAGTCCTTTCTTTCAGGAGACAGATGGATTCCTGCTTCGGGTGCTCCCTTTAAACCTTCTATGTGA 1725 0.4151 MSSLKAYGKIDEADQAMLEVRRKTRKRITIISLSTIVLIGVVCAAVFGTIAHNNGHDDDDNNNAQSLSSNSVVKAVCDVTLYKDSCYSSLSPLVHSGHVQPQELFLLSIQVAFNEVSRAVEYFSEQGDFKGLSVDNRTKEALKNCGDLLGLAADHLNSSLSSGEKSSLLDVLEDLKTWLSASGTYQQTCIDGFDEAGEALKSSVVSNLKNSTEFTSNSLAIITWLNNAATTVNLRRLLTLPNQNEEPNWLHSKDRKLLQTDDLKKKADIVVAKDGSGKYKTISDALKHVPEKSDKRTVIYVKRGTYYENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGKNFMAKDMGFRNTAGAEKHQAVALMTSADQAIFYRCQIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNILPKLPMQGQQNTITAQGKTDPNMNTGISIQNCNISPFGNLSSVQTYLGRPWKNYSTTVFMQSTLGSFINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGVRSITKKQASKFTVKSFLSGDRWIPASGAPFKPSM 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi723g00006 574 Gene3D - 263 574 IPR012334 -
Sebi723g00006 574 SUPERFAMILY Pectin lyase-like 266 570 IPR011050 -
Sebi723g00006 574 PANTHER PECTINESTERASE 39 564 - -
Sebi723g00006 574 CDD PMEI-like_3 75 225 - -
Sebi723g00006 574 FunFam Pectinesterase 69 226 - -
Sebi723g00006 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 227 IPR035513 -
Sebi723g00006 574 NCBIfam pectinesterase inhibitor domain 67 225 IPR006501 GO:0004857
Sebi723g00006 574 FunFam Pectinesterase 262 574 - -
Sebi723g00006 574 Pfam Plant invertase/pectin methylesterase inhibitor 72 221 IPR006501 GO:0004857
Sebi723g00006 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 225 IPR035513 -
Sebi723g00006 574 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Sebi723g00006 574 SMART PMEI_2 68 221 IPR006501 GO:0004857
Sebi723g00006 574 Pfam Pectinesterase 268 560 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi723g00006 Sebi-Chr723 145818 148698 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi723g00006 7 574 Carbohydrate Esterase AT3G10710 57.692 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi723g00006 - - gmx:100816529 937.947