Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00183 ATGGGAAGGTATCGAAGCCGAAGCCGAAGCTACAGCCCTCGACGGCGTAGCAGAACCCCACCGCGCGGACGCAAGCGCTACGATGATGATCGCGGTGACAGCAGGTCACACAGAGACCGACGCTCACCTCTTCCTTCTGGCTTGCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGACCCCATTCGAGCGCTATGGTCCTGTGAAGGATGTATATCTTCCTAGAAACTACTACACTGGTGAGCCTCGGGGCTTTGGATTTGTGAAGTATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACAGCTTAATCATACTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACTCCTCAAGAGATGCGCCTTAGTTCTCGTTCAAGTGGCCGACAAGGAGGTGGTAGAAGGAGGGCTAGGACAAGGTCCCCAAGACGCCGATATCGATCCTACTCTAGGTCTCCATCACCAGCCAGGGATGATTCAAGGGATGGCAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCTCCTAGTGATGGGAAGGACTACAGGAGGTCCCCTTATCCCAGGGAGAATGGTCGGAGTCCTAATGACAAGAAGGATCAGTCACCTAGCAGATCTCAGAGTCCTAGGGTTAATGATCGCAGCCGATCAAGGTCTCGTTCACGGTCATACAGTCCGCGCTGA 744 0.5108 MGRYRSRSRSYSPRRRSRTPPRGRKRYDDDRGDSRSHRDRRSPLPSGLLVRNLPLDARPEDLRTPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRLSSRSSGRQGGGRRRARTRSPRRRYRSYSRSPSPARDDSRDGRGRDDYYSPERSRSYSRSLSPSDGKDYRRSPYPRENGRSPNDKKDQSPSRSQSPRVNDRSRSRSRSRSYSPR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00183 247 SUPERFAMILY RNA-binding domain, RBD 48 152 IPR035979 GO:0003676
Sebi71g00183 247 MobiDBLite consensus disorder prediction 1 49 - -
Sebi71g00183 247 MobiDBLite consensus disorder prediction 22 44 - -
Sebi71g00183 247 SMART rrm1_1 47 120 IPR000504 GO:0003723
Sebi71g00183 247 SMART rrm2_1 47 120 IPR003954 GO:0003676
Sebi71g00183 247 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 244 - -
Sebi71g00183 247 MobiDBLite consensus disorder prediction 1 21 - -
Sebi71g00183 247 MobiDBLite consensus disorder prediction 197 224 - -
Sebi71g00183 247 MobiDBLite consensus disorder prediction 123 247 - -
Sebi71g00183 247 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 138 - -
Sebi71g00183 247 MobiDBLite consensus disorder prediction 163 186 - -
Sebi71g00183 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Sebi71g00183 247 Gene3D - 2 134 IPR012677 -
Sebi71g00183 247 MobiDBLite consensus disorder prediction 143 159 - -
Sebi71g00183 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00183 Sebi-Chr71 2036291 2039620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00183 50 108 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 5.78e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00183 K12900 - gmx:100788749 269.626