Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00172 ATGGGTTGTGTCCATGGCAAGTGTTGCTGCGGCAATTCTTCATCAGATGATGGCTCTAGGAACTACCGAGAAATTGGCTTCCGTAGGAAGAACGTAATTGCTCAGAGATCACTGAAGCATGTTGCTGTTCCTTCCCACAACTTCATTTTGGAATACACTTTTCTCACACAACGGGGATACTACCCTGACTCACCGGATAAAGAAAACCAAGATAGTTTCTGCATTAGGACACAAGTCCAAGGTAATCCCAATATCCATTTCTTTGGTGTCTATGATGGGCATGGTCAATTTGGTAGCCAGTGTTCCAACTTTGTTAAGGATAGGTTGGTAGAAAAATTATCAAACGACCCTGCATTGGTGGAGGACCCTGTCCAGGCTTACTCTTCTGCGTTCTTGACAACAAATCAAGAATTGCATATTAGTGAGATTGATGATTCTATGAGTGGCACTACCGCAATTACGGTGCTTGTTATTGGAGACACCCTATATGTTGCTAATGTTGGTGATTCAAGAGCTGTGCTAGCTGTTAAGGATGGGAATCGCATCATTGCTGAGGACTTGTCCTCTGATCAGACACCATTTCGGAGAGATGAATATGAGAGAGTGAAACTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATCAAGGATCCGAATATCCAACATTGGGGTGATGAAGAGAGTCGGGGTGGTGATCCTCCGAGATTGTGGGTTCCAAATGGGATGTATCCTGGAACTGCATTTACAAGGAGTATAGGGGACAGTTTGGCGGAGACTATTGGTGTCGTTGCTATCCCAGAGGTGTCAACAGTTAAGCTGACACCTAATCATCTTTTTTTTGTTGTGGCAAGTGATGGCGTATTTGAATTCCTCTCAAGCCAAACTATTGTTGATATGGCAGCAGGCTATACCGATCCTGGCGATGCATGTGAAGCTATTGCTGAAGAGTCATATAAACTATGGTTGGAACTTGAGAACCGAACAGATGATATAACAATCATCATTGTTCAGATCAAAGGCCTCACTAGTTTAAGTATGTCTGGAGTTGAATCAGGTGAGATCAATGTTAGTACTGCAATGAGGTCCAGGGCAGTAACTTCTGAGACATCTACTACCACTGGATCTGATGTCTGTCGTTCTGTGAAGAGCAGTTTCTCTGATTTACAATCCTGTCAGCACGTGGCTACAATGAGGAGCCCAGTCACAGTGAAAAATCGCTCCAATCGGGCGAACAATGTTATATCAGTTTCTTCTGAATTTACTCATCAATCTAAAATGGTTTCATTGGTTGCCAGTGGTAGCAGCCAAATGTCTCCCTCAGTTTCTGTCCAAGAAAAAGGGAGTAGGAACAAGAGAAAATTCAGGGCTGATCCGCCTTTAGGGGAGCTAAATAAGATTATTCCTGCACCTCAACAAGAGAGCCTTAGTTATGAATTCTCTGCTGAGAAGTTTGGAATAACCCCAGGTCATGGGCAAGCCGCTGCATGTGACCTGTGCAGTCTTAACCAAGATCATCCCGATGGATTGAAGCTTGACCTTGGATTGTATGGCCCTGGAAGTTCATCAGAAGTTGGTCTTAGTCAACCTAAGGAAGAACTCGAGGCAGATGAATTCAATGATGCTGATTGGAGCGATCTCACGGAAGCTCAGTTGGAAGAACTTGTCCTGAGTAATTTGGATACCATTTTCAAGAGTGCAATAAAAAAAATTATTGCATGTGGCTACACTGAAGAAGTTGCTACAAAGGCTATCTTAAGGTCTGGCATTTGTTATGGATGTAAAGATACTGTGTCTAATATAGTTGATAATACTTTAGCATTTCTTAGAAATGGCCAGGAGATCGATCCTTCACGAGAGCACTATTTTGAAGATTTATTACAACTTGAGAAGTATATTTTAGCTGAATTGGTTTGTGTGCTTCGAGAGGTTAGGCCATTCTTCAGTACCGGGGATGCAATGTGGTGTTTGTTAATTTGTGATATGAATGTATCACATGCATGTGCAATGGACTGTGACCCTTTAAGTACTTTAGCTAATGGTGGCACTGCTGATGGCTGTCCATCTAATCAAGCAGAATCACAATCAAAAACAGAAACCAAAGTTCCTAACTTAAGTCTTCCGAGTCCTTCTAAATCAATTCCCGCATCTTCTCATAATTCTCAATCTAAGAAACCCTTTGTGGCAGGAATTCATGGTGCAAACAACTTAAAAAATTCTCAAATTATTGGTGGACTCTCAGGTAATGAGGGTGCCAGTTGTGGACCTGACTGTTTTGATAAAACATTTAGTACTGCCGGAACATCACAAGCTCCCATGGTGGAAGAGAAGTGTGGAAGTGTTAGAAAGGTCCATTCTGGTAGCACCAAGAGGGATTACTTTCTTCGACAGAAGTCATTTCATGTAGAAAAAAGTTATCGCACTTATGGATCTAAAGGGTCCTCAAGAGGAGGGAAGCTGAGCGGCTTGAGTGGTTTAATCTTGGATAAAAAACTTAAATCTGTGTCAGAATCTTCTACTGTAAGTTTAAAGAGTGCATCCTTACAGATAAGCAAGGCAATGGGAATTGATGTGACTCAAGATAATCTTAATTCTAATTTCTCATCTAATGCTGGACCATCAACCCCTACTGCATTTAGCCTGGATTCTGCTGATGCCATTTCTAGATCAAACAATAATTCATATGCAGCAAATACTTTACCTGCATTCAGTAGCCCAGCTTCATTATCAGCTACAGATACAGATCTTTCTCTTTCATTGTCTTCAAAAACCAAGCCTTCTAAAGAACCTGTCTGCTGCAATAGCGAGGCACCTAATGGTAGTTATATGGGGATACATTATGATAAGTCCCTGGGGCAGTGGATACCCCAGGATGGAAAGGATGAGATGATTTTAAAGCTGGTTCCAAAGGTCCGGGAGCTGAAAAATCAGCTTCAAGAATGGACTGAGTGGGCTAATCAGAAGGTTATGCAGGCTGCTCGTCGGCTGAGTAAGGACAAGGCCGAGCTTCAAACTCTAAGGCAAGAGAAAGAGGAAGTTGAACGTCTTAAGAAAGAGAAGCAATCTCTGGAGGAAAATACCATGAAGAAGCTTTCTGAGATGGAAAATGCATTGTCTAATGCAAGTGGGCAGGTAGAGCGAGCTAATGCTGCTGTCCGGAAGCTTGAGGTGGAGAAGGCTGCACTGAGGAGAGAGATGGAGGCTGCTAAGCTACGTGCTACAGAAACTGCCGCAAGCTGTCAAGAGGTCTCAAGGAGAGAAAAGAAGACTCAAATGAAGTTCCAATCATGGGAAAAGCAGAAATCCTTGTTTCAGGGAGAGCTAATGATTGAAAAACGAAAATTGGCACAGCTGTTGCAGCAATTGGAGCAAGCTAGGATGCAACAGGAGCAATTTGAGGTCTCAGATCAATACTTCCCTTGCCACAGCCTAAGCTATCATGGGAAAATATCACAGGCTAGATGGCAGCAGGAAGCAAAGGCAAAAGAAGAACTTCTCCTACAGGCCAGTTCCATAAGAAAAGAAAGAGAACAAATTGAGGAGTCAGGAAAATCCAAGGAGGATATGATCAAATTGAAAGCAGAGAGGAATCTGCAAAGATACAGAGATGATATCCATAAACTTGAAAAGGAAATTGGCCAACTGAGACTGAAGACCGACTCTTCGAAAATTGCTGCACTGAGGATGGGGATTGATGGAAGCTACGCCAGCAGATGCGTGGACATGAAAAATGGCACTGCTCCATGTCAACCCCGTACTTCTTCTTTGATCTCAGAACTAGTGATGGACTACTCAGTGACAGGTGGTGTGAAAAGGGAAAGGGAGTGTGTGATGTGCCTTTCTGAGGAGATGTCTGTTGTATTCCTCCCATGTGCACATCAAGTTGTTTGCACAACATGCAATGAGCTTCATGAGAAACAAGGTATGCAAGATTGTCCTTCTTGCAGGAGCCCCATCCAGCAGCGTATTGCTGTGCGTTTTCCACGTAATTAA 3999 0.4301 MGCVHGKCCCGNSSSDDGSRNYREIGFRRKNVIAQRSLKHVAVPSHNFILEYTFLTQRGYYPDSPDKENQDSFCIRTQVQGNPNIHFFGVYDGHGQFGSQCSNFVKDRLVEKLSNDPALVEDPVQAYSSAFLTTNQELHISEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIIAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIKDPNIQHWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVVAIPEVSTVKLTPNHLFFVVASDGVFEFLSSQTIVDMAAGYTDPGDACEAIAEESYKLWLELENRTDDITIIIVQIKGLTSLSMSGVESGEINVSTAMRSRAVTSETSTTTGSDVCRSVKSSFSDLQSCQHVATMRSPVTVKNRSNRANNVISVSSEFTHQSKMVSLVASGSSQMSPSVSVQEKGSRNKRKFRADPPLGELNKIIPAPQQESLSYEFSAEKFGITPGHGQAAACDLCSLNQDHPDGLKLDLGLYGPGSSSEVGLSQPKEELEADEFNDADWSDLTEAQLEELVLSNLDTIFKSAIKKIIACGYTEEVATKAILRSGICYGCKDTVSNIVDNTLAFLRNGQEIDPSREHYFEDLLQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDCDPLSTLANGGTADGCPSNQAESQSKTETKVPNLSLPSPSKSIPASSHNSQSKKPFVAGIHGANNLKNSQIIGGLSGNEGASCGPDCFDKTFSTAGTSQAPMVEEKCGSVRKVHSGSTKRDYFLRQKSFHVEKSYRTYGSKGSSRGGKLSGLSGLILDKKLKSVSESSTVSLKSASLQISKAMGIDVTQDNLNSNFSSNAGPSTPTAFSLDSADAISRSNNNSYAANTLPAFSSPASLSATDTDLSLSLSSKTKPSKEPVCCNSEAPNGSYMGIHYDKSLGQWIPQDGKDEMILKLVPKVRELKNQLQEWTEWANQKVMQAARRLSKDKAELQTLRQEKEEVERLKKEKQSLEENTMKKLSEMENALSNASGQVERANAAVRKLEVEKAALRREMEAAKLRATETAASCQEVSRREKKTQMKFQSWEKQKSLFQGELMIEKRKLAQLLQQLEQARMQQEQFEVSDQYFPCHSLSYHGKISQARWQQEAKAKEELLLQASSIRKEREQIEESGKSKEDMIKLKAERNLQRYRDDIHKLEKEIGQLRLKTDSSKIAALRMGIDGSYASRCVDMKNGTAPCQPRTSSLISELVMDYSVTGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSPIQQRIAVRFPRN 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00172 1332 Coils Coil 1107 1137 - -
Sebi71g00172 1332 CDD RING-HC_MIP1-like 1273 1327 - -
Sebi71g00172 1332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1269 1328 IPR013083 -
Sebi71g00172 1332 Pfam Zinc finger, C3HC4 type (RING finger) 1275 1323 - -
Sebi71g00172 1332 PANTHER OS05G0141500 PROTEIN 439 1136 IPR046934 -
Sebi71g00172 1332 SUPERFAMILY RING/U-box 1273 1325 - -
Sebi71g00172 1332 Gene3D - 49 343 IPR036457 -
Sebi71g00172 1332 MobiDBLite consensus disorder prediction 686 727 - -
Sebi71g00172 1332 Coils Coil 1193 1220 - -
Sebi71g00172 1332 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 46 343 - -
Sebi71g00172 1332 Pfam Family of unknown function (DUF6592) 561 672 IPR046527 -
Sebi71g00172 1332 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Sebi71g00172 1332 Pfam Protein phosphatase 2C 75 318 IPR001932 -
Sebi71g00172 1332 CDD PP2Cc 67 341 IPR001932 -
Sebi71g00172 1332 ProSiteProfiles PPM-type phosphatase domain profile. 51 341 IPR001932 -
Sebi71g00172 1332 ProSiteProfiles Zinc finger RING-type profile. 1278 1318 IPR001841 -
Sebi71g00172 1332 MobiDBLite consensus disorder prediction 434 465 - -
Sebi71g00172 1332 SMART PP2C_4 47 339 IPR001932 -
Sebi71g00172 1332 MobiDBLite consensus disorder prediction 434 448 - -
Sebi71g00172 1332 SUPERFAMILY PP2C-like 42 343 IPR036457 -
Sebi71g00172 1332 Coils Coil 991 1074 - -
Sebi71g00172 1332 Coils Coil 1164 1184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00172 Sebi-Chr71 1923746 1934380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00172 1 346 PP2C-type Phosphatase Gene Family AT3G06270 69.914 1.75e-170 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00172 - - gsj:114420104 1277.31