Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00150 ATGGCACTGCCTGTACTTAGTGCACCCCAAATTCTATCGCTTCGGCGATTTGGAATTTCAAAGTTATCAGTGTCGGAGATCCCTCTTTCAACGCCAACAAAATGTCCAAGCATCCTTTCCCTGTCAATTTCTGCATCTACCTCTCTTCGCTACGCGCCTTTTCCACGGTTTTGCTGCACAACCAACTCTATGCCTTCTTCAACCAAAATCTTTATCAAAGGGCTTCCTCTCTCAACCTCTGAAGGACGTTTGATGAAGGTGTTTTCAGAGTTTGGTGAAGTTAATCAAGTCAAGCTTATGATAGACAAAGAATCTGGGCAGTCTTTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCACAATCGGCTGTGAAAGAGATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACGACTGCAAAGCCCATATCATCAAGAAGTTGGAAGAGGACAACAGCCTACAAATTTTGA 483 0.4203 MALPVLSAPQILSLRRFGISKLSVSEIPLSTPTKCPSILSLSISASTSLRYAPFPRFCCTTNSMPSSTKIFIKGLPLSTSEGRLMKVFSEFGEVNQVKLMIDKESGQSLGFAYIWFVKEESAQSAVKEMNGKFFDGRFIYVTTAKPISSRSWKRTTAYKF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00150 160 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 61 154 - -
Sebi71g00150 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 146 IPR000504 GO:0003723
Sebi71g00150 160 SMART rrm1_1 69 142 IPR000504 GO:0003723
Sebi71g00150 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 139 IPR000504 GO:0003723
Sebi71g00150 160 SUPERFAMILY RNA-binding domain, RBD 62 152 IPR035979 GO:0003676
Sebi71g00150 160 Gene3D - 60 159 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00150 Sebi-Chr71 1656683 1658608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00150 70 146 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 5.07e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00150 - - psat:127073405 193.356