Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00139 ATGGCCTTTGTCTTTCACCATAAGCAGCATCTTCTGAGGTTGCTTCTGACCCTTTTCGTAACGTTGCTTCCCTTACCTACGATTGTTGCTCAAACTCACAGGAACATTACATTGGGTTCCTCTCTCACAACGCTGCAAAACAACTCCTGGACATCACCATCGGGTGAATTTGCATTTGGTTTCCAGCAGATTGAGGAAGATGGGTTCTTATTAGCCATCTGGTTCAACAAAATACAAGAAAGAACTATTGTGTGGTATGCCAATGGTCAAAACTTAGTAGGAAAGGGTTCTAAAGTGGAACTCACCTCAGAGGGGCAATTCTGGCTCAAAGATCCCAGTGGCAAGGTGATATGGAATCCTCCTAACTTTAATGAAGTTGCTCATGCAGCCTTGCTTGATAGTGGCAACCTTGTGTTGGTAGATCAAGATTCTGTCACTATATGGCAGAGTTTTGATTATCCAACTGACACACTTTTACCAGGACAGATTCTCTCAAAAGAATCACCATCTCCAAGGCTCGTTTCACGTTATCTTGAATCAAACTTCACTAACGGGAGATTCCAGTTTTCTCTACAAAAGGATGGGAATCTTGTGCTCTACACACAACATTTCCCACAAGATAATAATAATTATGCTTATTGGTCTACTCAAGTTTTTGCCAAGAGCTTTAGGTGGGTCTTCAACCAATCTGGGTATATTTTCCTTGAGTTTAGTAATGGAAGCACAATCAATATGATATCTTCAACTGGCCTCTCCACCAAAGATTTCTATCAGAGAGCAATTCTTGATTATGATGGAGTTTTCAGGCACTATGTCTACCCCAAGAACACTAGTTCCAGTAAAGAAAGATGGTCCAATTGGACAGCTTCATCAGTCACAATACCCTCAAATATCTGTCTGAGAATTATAGGAGGAATGGGAGGTGGAGCATGTGGGTACAACAGCTACTGCACGTATGATGGTACTAAGAGATGCCACTGTCCACGTGGGTACAGCTTCATTGATCCAAATGATGTGATGAAAGGATGCAAACAGGACTTTGTTCCACAAAGTTGTGATGAACCTTCACTTCTCTTTTATATGGATGATATTCCAAATGCAGATTTCCCTGGAGCTGATGCTGAAGATTTTGAATCTGTAACTGAGGATTGGTGCAGACAGGCCTGCTTGAATGATTGTTTCTGTGCTGCTGCCATTTTCAAAGAAGGTAAATGTTGGCCTAAGAGGCAACCCCTCTCCAATGGAAGAATAGATACTGACTTTACAGCTGCATCCCGGTTTGGCTACTGGAATTCCAAGGTGGCTGAGTCTTCCCAATCCCAAGTCATCACTAAGCTCAATCTCAGAAGTTACACTTATGAAGAGTTAAGCAAAGCAACGAATGGATTCAATGAAGAACTTGGTCATGGTGCATTTGCAATAGTTTACAAAGGAGTTATCCCAGGAGTTAGTGAGAACATTGTTGCTGTTAAGAAGCTAGATACAAAGTCAAGAGGAATAGAGGAAGAATTTAAAGCAGAAGTGAGTACAATTGGTCAAACAAATCATAGAAATCTTGTACAACTGATAGGTTTCTGTGATGAAGGGCAGCACAGACTACTAGTATATGAATTCATGAGCAATGGATCTTTAGCAAGCTTCCTTTTTGGAGCACAAAAGCCAAGATGGTATCAAAGAAAGGAAATTGCATTGGCAATAGCAAGGGGACTCTTTTATCTGCATGATGAGTGTCGCACACAGATCATACATTGTGACATCAAGCCCCAAAATGTCCTTCTTGACAACAATTACACAGCAAGAATATCTGATTTTGGTTTAGCCAAGCTTTTGAAGCTTGAGCAGACTCGGACTACTACTGGAGTCAGAGGAACTAAAGGGTATGTTGCCCCTGAATGGTTCAGAAATGTTCCTGTTAGTGTAAAGGTGGATGTTTATAGCTATGGAATTTTGTTGCTGGAGATAATCTGTTGTAAGAAGAACTTTGAAGTAAATACTGATGACATGGTTATATTGGCGGATTGGGTATATGACTCCTTCAAGGATGGTAATGTGAGTGTGGTGGTGGAAGATGATAAAGAAGCAATGGAGGACATGAAGAGGGTGGAAAGGTTTGTGATGACTGCTATTTGGTGCATTCAGGAAGATCCATCACTCAGACCAACTATGAAGAAAGTGTTACTAATGCTTGAAGGGTCTGTTGACGTGCCCATTCCGCCTGATCCATCTTCTTTTTAA 2235 0.4121 MAFVFHHKQHLLRLLLTLFVTLLPLPTIVAQTHRNITLGSSLTTLQNNSWTSPSGEFAFGFQQIEEDGFLLAIWFNKIQERTIVWYANGQNLVGKGSKVELTSEGQFWLKDPSGKVIWNPPNFNEVAHAALLDSGNLVLVDQDSVTIWQSFDYPTDTLLPGQILSKESPSPRLVSRYLESNFTNGRFQFSLQKDGNLVLYTQHFPQDNNNYAYWSTQVFAKSFRWVFNQSGYIFLEFSNGSTINMISSTGLSTKDFYQRAILDYDGVFRHYVYPKNTSSSKERWSNWTASSVTIPSNICLRIIGGMGGGACGYNSYCTYDGTKRCHCPRGYSFIDPNDVMKGCKQDFVPQSCDEPSLLFYMDDIPNADFPGADAEDFESVTEDWCRQACLNDCFCAAAIFKEGKCWPKRQPLSNGRIDTDFTAASRFGYWNSKVAESSQSQVITKLNLRSYTYEELSKATNGFNEELGHGAFAIVYKGVIPGVSENIVAVKKLDTKSRGIEEEFKAEVSTIGQTNHRNLVQLIGFCDEGQHRLLVYEFMSNGSLASFLFGAQKPRWYQRKEIALAIARGLFYLHDECRTQIIHCDIKPQNVLLDNNYTARISDFGLAKLLKLEQTRTTTGVRGTKGYVAPEWFRNVPVSVKVDVYSYGILLLEIICCKKNFEVNTDDMVILADWVYDSFKDGNVSVVVEDDKEAMEDMKRVERFVMTAIWCIQEDPSLRPTMKKVLLMLEGSVDVPIPPDPSSF 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00139 744 ProSiteProfiles Bulb-type lectin domain profile. 35 152 IPR001480 -
Sebi71g00139 744 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 30 152 - -
Sebi71g00139 744 Pfam D-mannose binding lectin 82 166 IPR001480 -
Sebi71g00139 744 SMART blect_4 41 154 IPR001480 -
Sebi71g00139 744 SUPERFAMILY alpha-D-mannose-specific plant lectins 179 271 IPR036426 -
Sebi71g00139 744 Pfam Protein kinase domain 464 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi71g00139 744 SMART serkin_6 461 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi71g00139 744 Gene3D - 153 281 IPR036426 -
Sebi71g00139 744 Gene3D - 28 152 IPR036426 -
Sebi71g00139 744 CDD B_lectin 44 154 IPR001480 -
Sebi71g00139 744 Gene3D Transferase(Phosphotransferase) domain 1 539 734 - -
Sebi71g00139 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Sebi71g00139 744 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 539 737 - -
Sebi71g00139 744 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 46 740 - -
Sebi71g00139 744 CDD PAN_AP_plant 348 421 - -
Sebi71g00139 744 PIRSF SRK 423 744 IPR024171 GO:0004674
Sebi71g00139 744 PIRSF SRK 6 428 IPR024171 GO:0004674
Sebi71g00139 744 FunFam S-receptor-like serine/threonine-protein kinase 431 538 - -
Sebi71g00139 744 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 216 IPR036426 -
Sebi71g00139 744 ProSitePatterns Protein kinases ATP-binding region signature. 467 492 IPR017441 GO:0005524
Sebi71g00139 744 Gene3D Phosphorylase Kinase; domain 1 425 538 - -
Sebi71g00139 744 ProSiteProfiles Protein kinase domain profile. 461 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi71g00139 744 ProSiteProfiles PAN/Apple domain profile. 352 434 IPR003609 -
Sebi71g00139 744 SUPERFAMILY Protein kinase-like (PK-like) 440 730 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00139 Sebi-Chr71 1506063 1508471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00139 447 731 Receptor kinase-like Gene Family AT1G60800 43.197 3.23e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi71g00139 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00139 - - aip:107638596 845.884