Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00135 ATGATGCAGATGGAAGAGATTGGATATGTCTTGCCTACAGATATCCAGAGGCAAGCATTGCCTTATCTTTTTTCCGGGCGTGACTGCATACTTCATGCGCAGACAGGTTCTGGGAAGACACTTACATACCTACTTTTAATCTATTCCATCATCAACGCCAGAAAATCCTCTGTGCAAGCACTGATTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGATGTTGGCAGCAAAGCCAACTGGAGTTGAGGGAGAGCAGAAGTCATGTACCATCATGGCTCTGTTAGACGGAGGAACATTGAGAAGACATAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGGTAGACAACTTTTTTTGCTTGAAACTGTGCGGGTGCTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTTTCTTCGGAAGATTTTGACTTCATATTCATCTTGCAATAACCGCCAGACGGTTTTTGCCAGTGCATCTATACCACAGCACAACCGATTTCTTCATGACTGTGTGCAGCAAAAATGGACTAAGAGTGATGTGATCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAATATGTGATAAGAAAAGAAAGCTACAAACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCTAAAAAGGCTGGAAATGCTCCATCCACATCCCTTCTTATTGACTTTCTGAAAACATCATATCAAGGTTCTTTGGATATCCTCCTTCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTTTGTTGGAGGTTAGAAAAGGAGGTGGCCATCTCCTTGTGGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCAGAAGTGTCTCACATATACAACTTTGATCTGCCAAAGACTGCCATAGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACATGAATTGTACTGTTACTAGCATTATAGTTTCAGAGGAGCGGTTTGTTCTTCAGAGATATGAAAATGAGTTGATGTTTATTTGTGAAGAGCTTATACCATAA 1167 0.4207 MMQMEEIGYVLPTDIQRQALPYLFSGRDCILHAQTGSGKTLTYLLLIYSIINARKSSVQALILVPTRELGMQVTKVARMLAAKPTGVEGEQKSCTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLGRQLFLLETVRVLVVDEVDFIFNSSKQVSFLRKILTSYSSCNNRQTVFASASIPQHNRFLHDCVQQKWTKSDVIHIHVSAVEPMPSRLYHRFIICDKKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLLIDFLKTSYQGSLDILLLEDDMNFNSRAASLLEVRKGGGHLLVATDIAARGVDLPEVSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMNCTVTSIIVSEERFVLQRYENELMFICEELIP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00135 388 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 3 379 - -
Sebi71g00135 388 Gene3D - 1 204 IPR027417 -
Sebi71g00135 388 Gene3D - 216 385 IPR027417 -
Sebi71g00135 388 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 20 202 IPR014001 -
Sebi71g00135 388 Pfam Helicase conserved C-terminal domain 231 350 IPR001650 -
Sebi71g00135 388 SMART ultradead3 8 223 IPR014001 -
Sebi71g00135 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 354 IPR027417 -
Sebi71g00135 388 SMART helicmild6 268 352 IPR001650 -
Sebi71g00135 388 Pfam DEAD/DEAH box helicase 13 186 IPR011545 GO:0003676|GO:0005524
Sebi71g00135 388 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 231 388 IPR001650 -
Sebi71g00135 388 CDD DEADc 4 195 - -
Sebi71g00135 388 CDD SF2_C_DEAD 221 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00135 Sebi-Chr71 1487707 1492475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00135 8 386 Eukaryotic Initiation Factors Gene Family AT1G72730 28.497 8.94e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00135 - - ahf:112763379 691.034