Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00126 ATGATGCAGCCTGGCATGCCTCCACCCACCATGGCTCAACAGTCCAACCAACAATACCAACAGCAGCAACAACCCTATATGATGATGCCGCCACAGCCTCAGCCTCCCCCGATGTGGGCCCCATCTGCCCAGCATCCGGTTCAGTCGGTCCATCCTCCACAATCGGTCCAACCTGCCAGCGCCGATGAGATCCGTACCCTATGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTATAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAACAAACTAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAGGGCTGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCTAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGTGACTTGGCTGCGGATGTTACAGATTATCTTCTTCAGGAAACATTTAGAACTCGGTTTCCCTCAGTTAAGGGGGCCAAAGTTGTGATTGATAGGCTCACTGGCCGGACAAAGGGTTATGGTTTTGTGAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCTATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGTATTGGACCAGCCTCTAACAAAAACCCTGGCACTCAGCCAAAAGCTCAGTGCTATGCAATTGAAGTTATTTTTGTCGGCAATTTGGATCCTAATGTCACAGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCAGCCGGCAAGAGATGTGGGTTTGTCCAATTTACGGATAGGAGCTGTGCAGAGGAGGCTTTGCGGGTTTTAAATGGTACACTTTTGGGGGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAGCAGACTCAATCAGATCCAAACCAATGGAATTCTAGTGGATATTATGGATATGCTCAGGGTTATGAAAACTATGGTTATGCTCCTTCTGGACAGGACCCCAATATGTATGGCGGTTATCCAGGGTATGCTCAGCAATAG 1122 0.4652 MMQPGMPPPTMAQQSNQQYQQQQQPYMMMPPQPQPPPMWAPSAQHPVQSVHPPQSVQPASADEIRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRTRFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGTQPKAQCYAIEVIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFTDRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPNQWNSSGYYGYAQGYENYGYAPSGQDPNMYGGYPGYAQQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00126 373 Gene3D - 244 359 IPR012677 -
Sebi71g00126 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Sebi71g00126 373 SMART rrm1_1 66 141 IPR000504 GO:0003723
Sebi71g00126 373 SMART rrm1_1 159 233 IPR000504 GO:0003723
Sebi71g00126 373 SMART rrm1_1 253 320 IPR000504 GO:0003723
Sebi71g00126 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Sebi71g00126 373 FunFam Polyadenylate-binding protein RBP45C 150 238 - -
Sebi71g00126 373 Gene3D - 157 233 IPR012677 -
Sebi71g00126 373 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 54 328 - -
Sebi71g00126 373 MobiDBLite consensus disorder prediction 1 56 - -
Sebi71g00126 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Sebi71g00126 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Sebi71g00126 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 317 IPR000504 GO:0003723
Sebi71g00126 373 SUPERFAMILY RNA-binding domain, RBD 147 243 IPR035979 GO:0003676
Sebi71g00126 373 SUPERFAMILY RNA-binding domain, RBD 26 146 IPR035979 GO:0003676
Sebi71g00126 373 CDD RRM2_SECp43_like 157 236 - -
Sebi71g00126 373 CDD RRM1_SECp43_like 66 146 - -
Sebi71g00126 373 SUPERFAMILY RNA-binding domain, RBD 253 348 IPR035979 GO:0003676
Sebi71g00126 373 FunFam polyadenylate-binding protein RBP45 239 332 - -
Sebi71g00126 373 Gene3D - 7 153 IPR012677 -
Sebi71g00126 373 MobiDBLite consensus disorder prediction 8 27 - -
Sebi71g00126 373 MobiDBLite consensus disorder prediction 28 42 - -
Sebi71g00126 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 324 IPR000504 GO:0003723
Sebi71g00126 373 FunFam Polyadenylate-binding protein RBP45 8 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00126 Sebi-Chr71 1350012 1353626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00126 66 331 Eukaryotic Initiation Factors Gene Family AT4G34110 28.782 2.12e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00126 - - gmx:100796848 613.224