Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi71g00126 | ATGATGCAGCCTGGCATGCCTCCACCCACCATGGCTCAACAGTCCAACCAACAATACCAACAGCAGCAACAACCCTATATGATGATGCCGCCACAGCCTCAGCCTCCCCCGATGTGGGCCCCATCTGCCCAGCATCCGGTTCAGTCGGTCCATCCTCCACAATCGGTCCAACCTGCCAGCGCCGATGAGATCCGTACCCTATGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTATAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAACAAACTAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAGGGCTGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCTAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGTGACTTGGCTGCGGATGTTACAGATTATCTTCTTCAGGAAACATTTAGAACTCGGTTTCCCTCAGTTAAGGGGGCCAAAGTTGTGATTGATAGGCTCACTGGCCGGACAAAGGGTTATGGTTTTGTGAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCTATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGTATTGGACCAGCCTCTAACAAAAACCCTGGCACTCAGCCAAAAGCTCAGTGCTATGCAATTGAAGTTATTTTTGTCGGCAATTTGGATCCTAATGTCACAGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCAGCCGGCAAGAGATGTGGGTTTGTCCAATTTACGGATAGGAGCTGTGCAGAGGAGGCTTTGCGGGTTTTAAATGGTACACTTTTGGGGGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAGCAGACTCAATCAGATCCAAACCAATGGAATTCTAGTGGATATTATGGATATGCTCAGGGTTATGAAAACTATGGTTATGCTCCTTCTGGACAGGACCCCAATATGTATGGCGGTTATCCAGGGTATGCTCAGCAATAG | 1122 | 0.4652 | MMQPGMPPPTMAQQSNQQYQQQQQPYMMMPPQPQPPPMWAPSAQHPVQSVHPPQSVQPASADEIRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRTRFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGTQPKAQCYAIEVIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFTDRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPNQWNSSGYYGYAQGYENYGYAPSGQDPNMYGGYPGYAQQ | 373 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi71g00126 | 373 | Gene3D | - | 244 | 359 | IPR012677 | - | |
Sebi71g00126 | 373 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 65 | 145 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | SMART | rrm1_1 | 66 | 141 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | SMART | rrm1_1 | 159 | 233 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | SMART | rrm1_1 | 253 | 320 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 237 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | FunFam | Polyadenylate-binding protein RBP45C | 150 | 238 | - | - | |
Sebi71g00126 | 373 | Gene3D | - | 157 | 233 | IPR012677 | - | |
Sebi71g00126 | 373 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 54 | 328 | - | - | |
Sebi71g00126 | 373 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Sebi71g00126 | 373 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 223 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 67 | 132 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 317 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | SUPERFAMILY | RNA-binding domain, RBD | 147 | 243 | IPR035979 | GO:0003676 | |
Sebi71g00126 | 373 | SUPERFAMILY | RNA-binding domain, RBD | 26 | 146 | IPR035979 | GO:0003676 | |
Sebi71g00126 | 373 | CDD | RRM2_SECp43_like | 157 | 236 | - | - | |
Sebi71g00126 | 373 | CDD | RRM1_SECp43_like | 66 | 146 | - | - | |
Sebi71g00126 | 373 | SUPERFAMILY | RNA-binding domain, RBD | 253 | 348 | IPR035979 | GO:0003676 | |
Sebi71g00126 | 373 | FunFam | polyadenylate-binding protein RBP45 | 239 | 332 | - | - | |
Sebi71g00126 | 373 | Gene3D | - | 7 | 153 | IPR012677 | - | |
Sebi71g00126 | 373 | MobiDBLite | consensus disorder prediction | 8 | 27 | - | - | |
Sebi71g00126 | 373 | MobiDBLite | consensus disorder prediction | 28 | 42 | - | - | |
Sebi71g00126 | 373 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 324 | IPR000504 | GO:0003723 | |
Sebi71g00126 | 373 | FunFam | Polyadenylate-binding protein RBP45 | 8 | 149 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi71g00126 | Sebi-Chr71 | 1350012 | 1353626 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi71g00126 | 66 | 331 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.782 | 2.12e-29 | 117 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi71g00126 | - | - | gmx:100796848 | 613.224 |