Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00092 ATGCCTTGCATTACTAATAATAATAACCCCATCATGCTACACAACAGCACTGGATTAGGGCATTTGATGGAGATCGACCACAACAACAACAACGATGGGAGCTCTTCTTCTTCTTCATCCGCCTTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGCCTGTTGACAGCCTGCGTCAATTGTCAAAAGATTGGGGCTCCGGCTGAAGCATGTGCATGTGCAGCAGGCTCAGAGAATTCCATGGGTGAGGATCCGGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTCATCAAGAATGGATCATCTGAAGATGTTGATGTACACAACAACATAATAGATCCCCAGGCAGAGGACCAAGAACTGAAGGTTCAGCTTCTACGCAAGTACAGTGGATATCTAGGCAGTTTGAAGCATGAATTCATGAAGAAGAAGAAAAAAGGCAAGCTGCCTAAAGAAGCAAGACACAAATTGCTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTTGCAGAATCAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCTGAGGACATGCAGTTTGTGGTTGTGGATCCAAGCCATCCACACTACTATATGGACAATGTTCTGGGCAATCCGTTTCCCATGGATCTCTCCCACACAATGCTCTGA 726 0.4601 MPCITNNNNPIMLHNSTGLGHLMEIDHNNNNDGSSSSSSSALKAKIMAHPHYHRLLTACVNCQKIGAPAEACACAAGSENSMGEDPALDQFMEAYCEMLIKNGSSEDVDVHNNIIDPQAEDQELKVQLLRKYSGYLGSLKHEFMKKKKKGKLPKEARHKLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMDNVLGNPFPMDLSHTML 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00092 241 SMART ELK_2 123 144 IPR005539 GO:0003677
Sebi71g00092 241 Pfam ELK domain 123 144 IPR005539 GO:0003677
Sebi71g00092 241 ProSiteProfiles ELK domain profile. 123 143 IPR005539 GO:0003677
Sebi71g00092 241 Pfam KNOX2 domain 82 101 IPR005541 GO:0003677|GO:0005634
Sebi71g00092 241 Pfam Homeobox KN domain 163 202 IPR008422 GO:0003677|GO:0006355
Sebi71g00092 241 SMART KNOX1_2 40 80 IPR005540 GO:0003677|GO:0005634
Sebi71g00092 241 SMART HOX_1 145 210 IPR001356 GO:0003677
Sebi71g00092 241 FunFam Homeobox protein knotted-1-like 2 148 210 - -
Sebi71g00092 241 ProSiteProfiles 'Homeobox' domain profile. 143 206 IPR001356 GO:0003677
Sebi71g00092 241 Pfam KNOX1 domain 41 71 IPR005540 GO:0003677|GO:0005634
Sebi71g00092 241 ProSitePatterns 'Homeobox' domain signature. 181 204 IPR017970 GO:0000981|GO:0006355
Sebi71g00092 241 SUPERFAMILY Homeodomain-like 145 221 IPR009057 -
Sebi71g00092 241 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 212 - -
Sebi71g00092 241 CDD homeodomain 155 207 IPR001356 GO:0003677
Sebi71g00092 241 Gene3D - 141 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00092 Sebi-Chr71 977120 978852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00092 22 241 Homeobox Transcription Factor Family AT1G62360 60.976 4.61e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi71g00092 Homeobox_KN 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00092 - - gmx:100127401 354.755