LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi71g00074	ATGTCTGTCACCGAAACCCCCGGTCTCCAACACCGTCACCCGTCGAAGCGAAAATTCGACGATGAGGAAGAAGATGTCTCTGACCTAGTTTGTGTCAGAATGAGGAAGGAAGAGGCCAAGGTGGTTAACTCGTGGTCTTCGGGTTGCGGTGGCGAGTTACAAAGATCGCACTTGCAATTCTTCGTTCGAATGATGTCAGGAGGTAACACTATTGTTATGCAGGCTTATCCGGAAGAAACCGTCAAATCTATTCACGAACGCATTCAGATTATGAAAGGAATTCCCCTTTTCGAGCAGAGGTTAATTTACAGGGGAAAACAGCTTCAGTGGGAACAGACTCTCGCTGAGTGTTCCATCCAAAACGACGCCAACCTTCAACTCGTGGGTCGTATGCGCAGCACCGAACACCCTCAGGCGTGGCAGGTAATTAACGACATGATTTCTCACGTTTATCGTCTCTGTCGCGGGGAAACTGTTCACGATGCTTTGAAGACCATTAAGGGCCTCATCTCCAGTTACCTCAACATGACACCCAGAAACGACAACGATTCTGCCACTGGGTATTTTCAGATTTTCATGTCTTCATCTGCCCCTGCTGTGCTGGTCATGCTCTATGTCTCCCCCTATCCAGGTAACAAAACCTGTGCTGATTCTTCTGTTAGACATTTCTTGAATTCTTGTCGTAATACCTTGCCCAAGGCACTGCACACCCAGTGTGCTTGTGTGGTCTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGTTCTCACGACCCTTTGTATCTCTTTTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGTATTTCCTATGCTGCTTCTGAGAGTGAAAATGTTAAAGGATCAATTTTGATTCAAGATATTTTCCCCTTTGTGCGTGAGCTTGCTAATAGCTTGTTGTCGGATTTGGATTTGAGTATGGAGACCCCCTCCGTTGCTGGGTCTTTGTTCATCGACGTTGGGGATTTTACTGCCTTCTTAATCCCTTTGAGGACTGGAATCAGGGAGCAACGAGCTCTCCAAGATTCTATGACATACCAGCAGCGCCATAAGGACATGTTGCTCGTTGAAGAGATTGAATACCTTCATCTCTTGTACATTGAGTTATTGAACAAAATTGATCAGTGCCTTTCAAAATTGGAGAAAAGTTTGGCTGCCCAGGAAATGATGCAAGGGGATAATCTTTGTCCTGCATGGTCTCAGTATCTTTCCATTTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGATGCGTCAAAAGAATGTGCTGTGTCAACTCATCGTTCAATATGCAAAGAGGACTGATGAGCATCAGTGGATTCTTGAGCACAGGTCTGTCACGAATTTTGAGTCTAGGAGGCATTTGGCAATGATGATGTTCCCAGAGGTAAAAGAAGATTATGAGGACCTGCATGAGATGCTTATTGACAGGTCTCACTTACTGACTGAATCTTTTGAATACATAGCACGAGCTGAGCCCGAATCTCTGCATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCAGGTGTACTGAGGGAGTGGTTTGTTTTGGTATGTCAAGCACTATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAACTGATCAAAGGAGATTTTTCCCTAATCCTGATGCATTAGGACTGACGTTTGTTAGAGAGGTTGAGGAATTAGGACACAGGAAAGTGGTTGAACTCTGCCCTGGTGGGAAAAACATTGTAGTAAATAGTAAGAACAGGGGGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCCACATCTGAGCAAGTGTCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACACACCGAGTATAATGGCTATAAAGAGACAGATGTTCAGATAACTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCGGAACAGAGGAAGGTTCTTCTATTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTCGCTTCCCGTCTCTACATTTACAAATCCCTTGAACCTGGTGATCACCTGCCTTCATCTCACACATGCTTTTACCGGCTGTGTTTCCCAGCGTATTCATCTATGGCTGTCATGCAAGATCGTCTTGATGTCATTACTCAAGAACATGTTGGCTGCAGTTTTGGTACTTGGTGA	2328	0.4399	MSVTETPGLQHRHPSKRKFDDEEEDVSDLVCVRMRKEEAKVVNSWSSGCGGELQRSHLQFFVRMMSGGNTIVMQAYPEETVKSIHERIQIMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMISHVYRLCRGETVHDALKTIKGLISSYLNMTPRNDNDSATGYFQIFMSSSAPAVLVMLYVSPYPGNKTCADSSVRHFLNSCRNTLPKALHTQCACVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGISYAASESENVKGSILIQDIFPFVRELANSLLSDLDLSMETPSVAGSLFIDVGDFTAFLIPLRTGIREQRALQDSMTYQQRHKDMLLVEEIEYLHLLYIELLNKIDQCLSKLEKSLAAQEMMQGDNLCPAWSQYLSILKELYQISKLYDGAEEKLWSVLMRQKNVLCQLIVQYAKRTDEHQWILEHRSVTNFESRRHLAMMMFPEVKEDYEDLHEMLIDRSHLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFVLVCQALFNPQNALFVACPTDQRRFFPNPDALGLTFVREVEELGHRKVVELCPGGKNIVVNSKNRGKYVDLLIQDRFVTSTSEQVSHFAKGFADILSNSKLQQFFFQSLELEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDVQITWFWEIVGRMTAEQRKVLLFFWTSVKYLPVEGFRGFASRLYIYKSLEPGDHLPSSHTCFYRLCFPAYSSMAVMQDRLDVITQEHVGCSFGTW	775

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi71g00074	775	Pfam	Ubiquitin family	61	132	IPR000626	GO:0005515
	Sebi71g00074	775	SMART	ubq_7	58	130	IPR000626	GO:0005515
	Sebi71g00074	775	Gene3D	Hect, E3 ligase catalytic domain	658	773	-	-
	Sebi71g00074	775	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	52	146	-	-
	Sebi71g00074	775	SMART	hect_3	508	773	IPR000569	GO:0004842
	Sebi71g00074	775	ProSiteProfiles	HECT domain profile.	571	775	IPR000569	GO:0004842
	Sebi71g00074	775	MobiDBLite	consensus disorder prediction	1	21	-	-
	Sebi71g00074	775	FunFam	E3 ubiquitin-protein ligase UPL5	659	774	-	-
	Sebi71g00074	775	ProSiteProfiles	HECT domain profile.	510	568	IPR000569	GO:0004842
	Sebi71g00074	775	Pfam	HECT-domain (ubiquitin-transferase)	484	767	IPR000569	GO:0004842
	Sebi71g00074	775	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	567	773	-	-
	Sebi71g00074	775	PRINTS	Ubiquitin signature	90	110	IPR019956	-
	Sebi71g00074	775	PRINTS	Ubiquitin signature	111	132	IPR019956	-
	Sebi71g00074	775	PRINTS	Ubiquitin signature	69	89	IPR019956	-
	Sebi71g00074	775	SUPERFAMILY	Ubiquitin-like	59	146	IPR029071	-
	Sebi71g00074	775	Gene3D	-	52	148	-	-
	Sebi71g00074	775	Gene3D	Hect, E3 ligase catalytic domains	447	647	-	-
	Sebi71g00074	775	ProSiteProfiles	Ubiquitin domain profile.	58	134	IPR000626	GO:0005515
	Sebi71g00074	775	SUPERFAMILY	Hect, E3 ligase catalytic domain	485	761	IPR035983	GO:0004842

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi71g00074	Sebi-Chr71	763345	767762	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi71g00074	58	132	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	40.000	1.22e-11	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi71g00074	-		-	gmx:100796470	922.539