Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00064 ATGTGGTCATTTCTTGGTTATACAATTCAGTCTCCAAAGAAATCGTCGCCAGCATCATTTATACAATGCCAGCAGTTAATTGATCTGTTATCATCACAGCTCACAGCTTCATCCACTTCAAATGATAAACCTGATGACCAAGCTTTCTCCTCAGATACAGTAACAGTCTGCGCTGTGACAATGGTTTCTGCGGAGAATGATTCTGAGTACAATTCCAATACTCATTCCACCATTTCAAACAAAATTCAGCGACAAATTGGGAGATCCATGCGAACCATACGCTCCAATTTGTTCCAACACTCTGATTCCCACACCTTGACCAATACCCTCATCGACCTCGCCTCCCGAAACAACAAACCCCTTAAAGTCGATGAACAACTTCTAGAACTTTCTCAAGCTTTCAGCGATTTCTCCGCTTGCAGCAGCGATATCTCCGGCGAGCTCCAGAGGCTGGCCACCGTCTCTTCCTCCGAAAACAACCACTCTGCCGCTGCTGACGTGGACCACCAACTCCAGCCCGAGCCTTGCCTAGGCTTCACCGAGATTATTGAAACTATTTCACCCGAGGATCTTCAGCCGACGGTCTCGATCTGCGTCGACGGTCTCCAATCGCCGTCGATCTCCGTGAAGCGATCGGCGGCAGCCAAGCTGAGGCTGTTGGCCAAGAACCGGGCGGATAACCGTGCTCTGATCGGCGAGTCCGGTGCCATTCCTGCTTTGGTTCCGCTGCTCCGGTGCAGTGATCCGTGGACGCAGGAACACGCCGTGACGGCATTGCTGAATCTGTCTCTGCTCGAAGACAACAAGGTGCTGATAACGAACGCAGGTGCTGTGAAGTCACTTGTTTATGTGCTCAAAACGGGGACGGAGACTTCAAAGCAGAACGCGGCTTGTGCGCTTTTGAGCCTTGCCGTGGTGGAGGAAAACAAGAGCTCCATCGGTGCTTGTGGGGCTATACCACCGCTTGTTTCGTTGCTGTTGAGTGGTTCCAGCAGGGGGAAGAAAGATGCACTCACCACGCTTTACAAGCTGTGTTCGGTGAAGCAGAACAAGGAGAGGGCGGTGAGCGCTGGAGTGGTGAAGCCACTGGTGGAGCTGGTGGCGGAGGAAGGGACTGGTATGGCTGATAAGGCAATGGTGGTGCTGAATAGCTTGGCGGGGATTCAAGAGGGAAGGGAAGCAATTGTGGAACAGGGTGGAATAGCTGCTCTTGTTGAAGCCATTGAAGATGGGTCGGTGAAGGGAAAGGAATTTGCTGTTTTGACTCTTGTGCAGCTATGTGCTGATAGCGTCAGGAACAGAGGAATGCTTGTGAGGGAAGGTGGGATTCCTCCTCTCGTTGCTCTCTCCCAGACTGGGACTGTTCGAGCTAAGCACAAGGCTGAGACACTCCTTGGATACCTGAGAGAATCAAGACAAGAAGCATCCTCTTCAAGTCCTTAG 1443 0.5156 MWSFLGYTIQSPKKSSPASFIQCQQLIDLLSSQLTASSTSNDKPDDQAFSSDTVTVCAVTMVSAENDSEYNSNTHSTISNKIQRQIGRSMRTIRSNLFQHSDSHTLTNTLIDLASRNNKPLKVDEQLLELSQAFSDFSACSSDISGELQRLATVSSSENNHSAAADVDHQLQPEPCLGFTEIIETISPEDLQPTVSICVDGLQSPSISVKRSAAAKLRLLAKNRADNRALIGESGAIPALVPLLRCSDPWTQEHAVTALLNLSLLEDNKVLITNAGAVKSLVYVLKTGTETSKQNAACALLSLAVVEENKSSIGACGAIPPLVSLLLSGSSRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEEGTGMADKAMVVLNSLAGIQEGREAIVEQGGIAALVEAIEDGSVKGKEFAVLTLVQLCADSVRNRGMLVREGGIPPLVALSQTGTVRAKHKAETLLGYLRESRQEASSSSP 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00064 480 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 359 IPR000225 GO:0005515
Sebi71g00064 480 FunFam U-box domain-containing protein 4 334 475 - -
Sebi71g00064 480 FunFam U-box domain-containing protein 4 181 333 - -
Sebi71g00064 480 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
Sebi71g00064 480 SMART arm_5 430 470 IPR000225 GO:0005515
Sebi71g00064 480 SMART arm_5 306 346 IPR000225 GO:0005515
Sebi71g00064 480 SMART arm_5 224 264 IPR000225 GO:0005515
Sebi71g00064 480 SMART arm_5 265 305 IPR000225 GO:0005515
Sebi71g00064 480 SMART arm_5 388 428 IPR000225 GO:0005515
Sebi71g00064 480 SUPERFAMILY ARM repeat 192 469 IPR016024 -
Sebi71g00064 480 Gene3D - 91 331 IPR011989 -
Sebi71g00064 480 Gene3D - 337 479 IPR011989 -
Sebi71g00064 480 Pfam Armadillo/beta-catenin-like repeat 308 346 IPR000225 GO:0005515
Sebi71g00064 480 Pfam Armadillo/beta-catenin-like repeat 226 263 IPR000225 GO:0005515
Sebi71g00064 480 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 358 400 IPR000225 GO:0005515
Sebi71g00064 480 PANTHER U BOX DOMAIN-CONTAINING 135 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00064 Sebi-Chr71 654052 664744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00064 190 473 U-box Gene Family AT2G23140 50.352 1.69e-81 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00064 - - gmx:100792402 613.609