Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00034 ATGTCGACATTGGAGAGGGAGCATGACGAGTGCTTGCACCACGATTCCGATGAAGAAAGCTCCAGTTGGAGTTGCGGTTTAATTGGACCCAAGAGGAACCAAGTCTTTGATTCAGAGTCAGAGTCAGAGGAGCTGTTTGAGATCAATCTGAATTTGAAGGAGAAGGAGCCTCCTTTGGATACAATAAGAGAAGATTGCGAGAGCACCGTGTTCTCTCTTGATATTAATCACAAAGATAAAGATGTCGTTTATGTGGCAGTGGGCGACGGTGGAGATTCAAGCATGGAAGCGCTTTCATGGGCCTTGAACCACGCCGTAACACCCTCTACCACCGTTTGCCTCATACACGTTTTCCCTCGAGTCAAGCTCATTCCTAGTCCATTGGGAAAAATTCCAAGGAGCCACGTAAATCTAGAGTATGTCAACATCTACTTGAACCAAGAGAAAGGCAAGAGGAAATCGCTACTTCAAAAGTTCACTGACCTATGCATTGATTCAAAGGTTAAGGTGGAGATGATGCTTATTGAGGGTGACATTGTTGCTAAAGCCATCGTGGACCTTGTCGGGAATCTGAATATAAGGAAATTGAAATTGGCGGAGCGGGAGCGCGAGAAAGAGCTGGATGCCATCAAGGAGCAGTACCTTGGGTCCAAGAAGCCTAAGAAACGGGTTATCAAGCCTAGCGAGAAGTTTCGCTTCTCGTTCGATTGGGAAAACACCGAGGACACGTCCCGCGACATGAATTCCCTTTACCAGAACCCTCACGAGGCTCAGCTTCTGTTTGGCCGAGGGTTCCGCGCGGGGATGGACCGCCGCGAGCAGAAGAAGCTGGCTGCCAAGAACGAGAAGGAGATGCGAGAGCAAATCCGGAAGAAGGACGGCGTGGAGGAGAAGCCGGAGGAGGCGGACGCGCAGCGGCGGAAGGAGGCTGCTGCTGATCTGTACGACACCTTTGATATGAGGGTGGACCGCCATTGGAGTGAGAAGAAGCTGGAAGAGATGGCGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGCGTAGCTGGATTGAGAGCAAGTTGAGCAATGAGCTCTTGAAGGCTGTGGAGAAGGCTGGTTACAAGACCCCATCTCCCATTCAGATGGCAGCTATTCCCCTTGGCTTGCAGCAGCGCGATGTAATTGGCATTGCTGAGACTGGTTCCGGGAAGACTGCTGCATTTGTTCTTCCCATGTTGAGTTACATCACTAGGCTTCCTCCCATGAGTGAGGAGAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCCACTCGTGAGCTTGCGCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGCTGTGAAATTGTGATTGCCACTCCGGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGAATGATTGATATGGGGTTTGAGCCACAGGTTATGGGTGTGCTGGATGCCATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAGGAGCTTGATGAGAAGAAGATTTACAGGACCACTTATATGTTTAGTGCCACCATGCCACCCGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTAACCATAGGTACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTCAACATGATGAAGGAATCTGAGAAATTTCCTAAGCTTCAGAGATTGCTTGATGAGCTTAATGACAAGACTGCAATTGTATTCGTTAACACCAAGAAGAATGCTGATATGGTTGCCAAAAATTTAGATAAGGAAGGCTATCGTGTGACTACTTTGCATGGAGGGAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTTCTTGTAGCAACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTAATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACAGGTGTGGCTACAACCTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCAAAATTCAAACCAGGAACTATTCCCGACAGACCACCTAGACGTAATGACACTGTTTTTGCGCATTAG 2343 0.4806 MSTLEREHDECLHHDSDEESSSWSCGLIGPKRNQVFDSESESEELFEINLNLKEKEPPLDTIREDCESTVFSLDINHKDKDVVYVAVGDGGDSSMEALSWALNHAVTPSTTVCLIHVFPRVKLIPSPLGKIPRSHVNLEYVNIYLNQEKGKRKSLLQKFTDLCIDSKVKVEMMLIEGDIVAKAIVDLVGNLNIRKLKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMAERDWRIFREDFNISYKGSKIPRPMRSWIESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVNMMKESEKFPKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00034 780 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 391 586 IPR014001 -
Sebi71g00034 780 MobiDBLite consensus disorder prediction 1 20 - -
Sebi71g00034 780 Coils Coil 604 624 - -
Sebi71g00034 780 FunFam probable ATP-dependent RNA helicase DDX23 591 779 - -
Sebi71g00034 780 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 360 388 IPR014014 GO:0003724
Sebi71g00034 780 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 515 523 IPR000629 -
Sebi71g00034 780 SMART ultradead3 379 601 IPR014001 -
Sebi71g00034 780 Gene3D - 321 590 IPR027417 -
Sebi71g00034 780 MobiDBLite consensus disorder prediction 755 780 - -
Sebi71g00034 780 Coils Coil 272 298 - -
Sebi71g00034 780 Gene3D - 591 778 IPR027417 -
Sebi71g00034 780 Gene3D HUPs 83 217 IPR014729 -
Sebi71g00034 780 MobiDBLite consensus disorder prediction 748 780 - -
Sebi71g00034 780 Pfam Helicase conserved C-terminal domain 610 718 IPR001650 -
Sebi71g00034 780 CDD SF2_C_DEAD 598 727 - -
Sebi71g00034 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 739 IPR027417 -
Sebi71g00034 780 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 302 757 - -
Sebi71g00034 780 MobiDBLite consensus disorder prediction 272 308 - -
Sebi71g00034 780 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 88 193 - -
Sebi71g00034 780 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 613 757 IPR001650 -
Sebi71g00034 780 FunFam probable ATP-dependent RNA helicase DDX23 321 590 - -
Sebi71g00034 780 Pfam DEAD/DEAH box helicase 385 575 IPR011545 GO:0003676|GO:0005524
Sebi71g00034 780 MobiDBLite consensus disorder prediction 1 25 - -
Sebi71g00034 780 Coils Coil 193 213 - -
Sebi71g00034 780 SMART helicmild6 637 718 IPR001650 -
Sebi71g00034 780 CDD DEADc_DDX23 371 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00034 Sebi-Chr71 361702 366622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00034 361 741 Eukaryotic Initiation Factors Gene Family AT1G72730 33.770 5.07e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00034 K12858 - gmx:100792810 1129.78