Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi71g00012 ATGGCAATTGCAGCAGCAAACTCATCATCACCCACCATGAGCCTCAGCCATAGCCACAGTCATGACGATGCTACTACCACCACTTCCGCTACCAACGACAACAATAATAAGCTAGATGATCACGAGAACGACACCGTTATGCCAGGGTTTCGATTCCACCCAACTGAAGAAGAGCTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTCATCACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCTTTGGCGGCTATAGGGGAGAAGGAATGGTATTTTTATGTGCCTCGAGATAGAAAGTATCGGAACGGGGATCGTCCAAATCGTGTGACTACTTCTGGGTATTGGAAGGCGACAGGAGCGGATAGGATGATCCGAACCGAAAACTTCCGCTCCATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCACAACATGAAACTGAACGATATCAAAAGAGAGCTGGAGTAGAAGACCATCCGTCCCTCCCTCGCTGTCTCCCAACAAAGCCATCCTCGTCAAGAGACAAGAAGCAGAATGAAATGGTGGTAGGATTTGGTGGACAATCAAAGGCAATCGATCAGATAAACGAAAATACGGAGGGAAATTCGGATGTGACGACAGCTCTTGCGCTCTCAAAGCACAATGCTTACCGTGCTGCAATGGGACTGCCAATGCCAATGGAAGAGGAAGGGTTGATGATCATGCAGCAGCAGCAATCTAAGCAACAACCACATGCTACCAACTCTTTACTCTCCTCGATCTACCCTGCTGCTTGTGGTGCTTCTTCTTCGGGTTCATCGAATAACAATGTAGCAGCAGTAGCAATGATGGATGATCTGAATAGGCTAGTGAGTTATCCGCAGCAGTTCTACAATGTTCAATTTCAAAGCCATCCCAATCATCACTTATCTACTTTGCTGATGCAACCTCCTGCTCCTGCTCCACCTGTTGTACTACCAATGTCTCTCAACTCACTACCAAATCCACTTCCAACTACCTTCTCTGACCGACTGTGGGATTGGAATCTAATGCCTGAGGTAAATCAAGAGCACAACAACATCTCCTTCAAGCAATGA 1167 0.4722 MAIAAANSSSPTMSLSHSHSHDDATTTTSATNDNNNKLDDHENDTVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKRAGVEDHPSLPRCLPTKPSSSRDKKQNEMVVGFGGQSKAIDQINENTEGNSDVTTALALSKHNAYRAAMGLPMPMEEEGLMIMQQQQSKQQPHATNSLLSSIYPAACGASSSGSSNNNVAAVAMMDDLNRLVSYPQQFYNVQFQSHPNHHLSTLLMQPPAPAPPVVLPMSLNSLPNPLPTTFSDRLWDWNLMPEVNQEHNNISFKQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi71g00012 388 MobiDBLite consensus disorder prediction 1 47 - -
Sebi71g00012 388 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 44 269 - -
Sebi71g00012 388 Pfam No apical meristem (NAM) protein 48 172 IPR003441 GO:0003677|GO:0006355
Sebi71g00012 388 ProSiteProfiles NAC domain profile. 46 198 IPR003441 GO:0003677|GO:0006355
Sebi71g00012 388 MobiDBLite consensus disorder prediction 183 208 - -
Sebi71g00012 388 MobiDBLite consensus disorder prediction 1 34 - -
Sebi71g00012 388 FunFam NAC domain-containing protein 35 55 195 - -
Sebi71g00012 388 SUPERFAMILY NAC domain 46 178 IPR036093 GO:0003677|GO:0006355
Sebi71g00012 388 Gene3D NAC domain 55 214 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi71g00012 Sebi-Chr71 139523 141579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi71g00012 46 199 NAC Transcription Factor Family AT2G02450 85.366 6.70e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi71g00012 NAM 3.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi71g00012 - - gmx:100792622 482.641