Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi719g00029 ATGGCTTTGGAGGCTCTAAATCTAAATTCTCCAATGATGAGCGTAGAGGAAGAGGTGAAGAGGAAGCGATCCAAACGACCCCGTTTAGATATCCCATCCAATTCCAATTGTACAGAGGAAGAGTACCTTGCTCTCTGTCTCATCATGCTCGCCCACAACAAGACAGAACCAGAACCAGAGAGTCACAAGTGCAGCATCTGCAATAAAACCTTTCCATCTTACCAAGCACTCGGAGGCCACAAGGCAAGCCACCGCAAGTCCTCGCCCGAAGCCGACAACGTCCCCACCACCATCGGAATCGGAAGGATGCATCAGTGTTCCATATGTCACAAGGCCTTCCCCACGGGTCAGGCTCTGGGCGGCCATAAGCGATGCCACTATGACCGTGCTTTTGACTTGAATTTGCCGCCCATCACTCCTCCTCAGGACCAAACCCCTTAA 441 0.517 MALEALNLNSPMMSVEEEVKRKRSKRPRLDIPSNSNCTEEEYLALCLIMLAHNKTEPEPESHKCSICNKTFPSYQALGGHKASHRKSSPEADNVPTTIGIGRMHQCSICHKAFPTGQALGGHKRCHYDRAFDLNLPPITPPQDQTP 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi719g00029 146 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Sebi719g00029 146 MobiDBLite consensus disorder prediction 15 29 - -
Sebi719g00029 146 Pfam C2H2-type zinc finger 104 128 - -
Sebi719g00029 146 Pfam C2H2-type zinc finger 62 86 - -
Sebi719g00029 146 MobiDBLite consensus disorder prediction 1 33 - -
Sebi719g00029 146 SUPERFAMILY beta-beta-alpha zinc fingers 60 89 IPR036236 -
Sebi719g00029 146 Gene3D Classic Zinc Finger 60 126 - -
Sebi719g00029 146 SMART c2h2final6 62 84 IPR013087 -
Sebi719g00029 146 SMART c2h2final6 104 126 IPR013087 -
Sebi719g00029 146 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 30 132 IPR044653 GO:0003700
Sebi719g00029 146 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Sebi719g00029 146 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Sebi719g00029 146 SUPERFAMILY beta-beta-alpha zinc fingers 102 129 IPR036236 -
Sebi719g00029 146 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi719g00029 Sebi-Chr719 323183 323623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi719g00029 1 145 C2H2 Transcription Factor Family AT5G43170 45.304 9.27e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi719g00029 zf-C2H2_6 2.7e-11 CL0361