LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi719g00008	ATGGTTAGCACAAAACATTACTGGGCAACCCTGTTTGGGTTGCTAAGCCTTGCATCACAAGCAGTTGCTACTCCTACTTACATCGGCTCTCACTGCAACAACAACACCACATACGCACCCAACAGCACACTGGCTGTCAATCTTAATGTTCTCCTCTATTCTCTCACCACCAACTCCTCCCAACAACAAGACGGTTACTATTTGACCATCATGGGCTTTGGAACAACCGATGCAGTCAACGGCATCTTTCTCTGCCGCGGCGACATCAACACCACCGTCTGTCAACAGTGTGTAACCACCGCTGCCAGAGAGATAACACGCCACTGCCCCAACCAAACGGAGGCCGTTATCTGGTACCAGGAGTGTTTGTTGCGTTACACAAACAAGTACTTCAAGTACTACAGCATCGAACCCAGATTGAACCCCATGGATGGCAACAACAACATCTCTGCCGTTGACTTTGAACGGTTCAACCAATCAGTGTTCACCTTGTTGAATGAATTGGCAACGGAAGCGGCGAATTCACTGTCGGCCAAGAAGTTCGCCACCGGGGAAATGGAAGTGACCAAGTCTCAGACGGTGTATGGATTGGCGCAGTGCAGCACCGATTTAACGAGTGGTCAGTGTGAGATATGTTTACGAAACGCCATCGGAACTCTTCCCGCGTGCTGCAGCGCCAAACAGGGCGCAGGTGCTCTGCTTGCGTCCTGTATTGTCAGATACGAACCCTACCCATTTTACAATATAACTGGGACGCGGACGCCATCGTCATCTTCTTCAGGATGCTATTGCCAGCGGAGGAGATCGAAGCAGAGACATAGGACAATTCTAAAGGAAAATTTTGGGGATGAGCTGAAGACTTTGGAATCATTACAATTCACTTTGGCTACAATTGAAGCTGCCACAAACAAGTTTTCACATGAGAACAAAATTGGCAGAGGAGGATTTGGTGTTGTCTACAAGGGTGTTCTCCCCGATGGACGACAAATAGCGGTAAAGAAACTTTCAAGAAGCTCCGGACAAGAACAAGAGAAAATGCTTATATACGAGTATGTGACAAACAAGAGTCTCGATCACTTTCTATTCGATCCTCAAAAGCAAAGGGTGCTGCATTGGTTTGAGCGTTATAAAATTATAGGAGAAATTGCACGAGGAATTCTTTACTTACATGACCATTCACGACTTAAAGTCATACATCGAGATCTCAAACCTAGCAATGTATTGTTAGATGACAATATGAATCCAAAAATATCTGATTTTGGTATGGCAAGAATAGTAGCAATTGATCAAGAACAAGGAAGCACTAATAGAATTGTCGGAACATATGGTTACATGTCTCCAGAATATGCAATGCATGGACAGTTTTCTGAGAAGTCAGATGTATTCAGTTTTGGAGTCATAGTTCTTGAGATAGTTAGTGCAAAGAGGAATGCTCGTCCAATTGAATCACAAGATTTTGAAGATCTCCTAAGCACCGTGAGTATTGAAATCTAA	1494	0.4465	MVSTKHYWATLFGLLSLASQAVATPTYIGSHCNNNTTYAPNSTLAVNLNVLLYSLTTNSSQQQDGYYLTIMGFGTTDAVNGIFLCRGDINTTVCQQCVTTAAREITRHCPNQTEAVIWYQECLLRYTNKYFKYYSIEPRLNPMDGNNNISAVDFERFNQSVFTLLNELATEAANSLSAKKFATGEMEVTKSQTVYGLAQCSTDLTSGQCEICLRNAIGTLPACCSAKQGAGALLASCIVRYEPYPFYNITGTRTPSSSSSGCYCQRRRSKQRHRTILKENFGDELKTLESLQFTLATIEAATNKFSHENKIGRGGFGVVYKGVLPDGRQIAVKKLSRSSGQEQEKMLIYEYVTNKSLDHFLFDPQKQRVLHWFERYKIIGEIARGILYLHDHSRLKVIHRDLKPSNVLLDDNMNPKISDFGMARIVAIDQEQGSTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVLEIVSAKRNARPIESQDFEDLLSTVSIEI	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi719g00008	497	Pfam	Salt stress response/antifungal	154	243	IPR002902	-
	Sebi719g00008	497	Pfam	Salt stress response/antifungal	32	128	IPR002902	-
	Sebi719g00008	497	SMART	serkin_6	305	497	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi719g00008	497	ProSiteProfiles	Protein kinase domain profile.	270	497	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi719g00008	497	ProSiteProfiles	Gnk2-homologous domain profile.	137	246	IPR002902	-
	Sebi719g00008	497	Gene3D	-	142	246	IPR038408	-
	Sebi719g00008	497	Gene3D	-	24	131	IPR038408	-
	Sebi719g00008	497	ProSiteProfiles	Gnk2-homologous domain profile.	26	131	IPR002902	-
	Sebi719g00008	497	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	24	491	-	-
	Sebi719g00008	497	FunFam	Cysteine-rich receptor-like protein kinase 10	141	246	-	-
	Sebi719g00008	497	FunFam	Lectin-domain containing receptor kinase A4.3	352	495	-	-
	Sebi719g00008	497	ProSitePatterns	Protein kinases ATP-binding region signature.	311	334	IPR017441	GO:0005524
	Sebi719g00008	497	SUPERFAMILY	Protein kinase-like (PK-like)	288	481	IPR011009	-
	Sebi719g00008	497	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	397	409	IPR008271	GO:0004672\|GO:0006468
	Sebi719g00008	497	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	25	131	-	-
	Sebi719g00008	497	Gene3D	Transferase(Phosphotransferase) domain 1	356	495	-	-
	Sebi719g00008	497	Pfam	Protein kinase domain	342	477	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi719g00008	497	Gene3D	Phosphorylase Kinase; domain 1	264	355	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi719g00008	Sebi-Chr719	78008	80340	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi719g00008	14	493	Receptor kinase-like Gene Family	AT4G05200	41.906	1.63e-138	413

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Sebi719g00008		Pkinase	3.7e-30	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi719g00008	-		-	cam:101500396	736.873