Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi719g00007 ATGCCTTCGCTGAAGCTTGTGTTGCTGTTTACAGCTGTTAGCTTCATAAGCTTTGGTAGTATCAAAGCACAGGACGCTCCTGTCTATCTTTACAAAAACTGCTCAACCAACAGCACTACCACCGCCAACAGTGCCTTCCAACTCCACCTCAAGACCCTCCTCTCTTCCCTCTCTTCCAACGCCACCGCCACCACCGAATTCTACAACACCACCGTCACCGGAAGATCCCCCTCCGACACGGTGTATGGACTTTTCATGTGCCGTGGTGACGTGGCACCTGCGCTGTGTCGACAATGTGTTGTGAACGCAACTCAACGACTTGTCTCAGAGTGCTCTTTGTCCAAACAGGCTGTGATATGGTACGACGAGTGCACGGTGCGCTACTCCAACCGCTCTTTCTTCTCCACGGTGGACACGAGGCCTCGCCTTGGCCTCCTCAACACCGCAAATATCTCCAATCAGGAAAGCTTCATGCGTTTGCTCTTCCAAACCATAAACAAAACTGCTGATGAGGCTGCCAATTCTTCTATTGGCTCCAAGAAATATGCCACTAACCAAGCAACCATTTCTGGGTTTCAGTCACTCTACTGTTTGGCACAGTGTACGCCTGATCTCTCACCCCAAGATTGCAGAAGGTGTCTCAGTGGCGTCATAGGAGACCTTCCATGGTGCTGTCAAGGAAAACAGGGTGGAAGGGTTCTTTATCCTAGCTGTAATGTTAGGTATGAGCTTTACCCTTTCTATCGCAACACTACTTCGCCATCGCCAACGCCAACGCCCTCACCGCCACTTCTTGTTCCTCCTACTGCTCCTGCCAATTCGGGAGGAAACAGTGGGATCTCAGCAGGTACTATTATTGCAATTGTTGTTCCAATAACAGTCGCTGTGCTTCTATTTATCGTCGGCGTTTGTTTCTTGACTAGAAGAGTTAGGAAGAAGCATGATTCTGTACCAGAGGGAAAGACTGCATATGACATCAGCACTGTGGAGTCCTTGCAATTCGATTTTGGCACAATTGAAGCCGCCACAGACAAATTCTCTGTAGATAACAAGCTGGGTGAAGGTGGATTTGGTGAGGTTTATAAGGGCACTCTTCCAAGCGGACAACAAATAGCTGTCAAGAGACTCTCCAAAAGTTCTGGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCCAAGCTTCAACACAGAAATTTGGTGAGGCTTCTGGGATTTTGCTTGCAAGGAGAAGAAAAGATACTTGTTTATGAATATGTGCCCAACAAAAGTCTTGACTATACACTTTTTGATCCTGAAAAGCAAAGGGAGTTGGATTGGGCAAGGCGTTACAGGATTATTGGAGGAATTGCAAGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACACCGTGATCTCAAACCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCAGATTTTGGTATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACCAGCAGAATCGTAGGGACTTATGGTTACATGTCTCCAGAATATGCAATGCATGGAGAGTTCTCTGTTAAGTCTGATGTGTACAGTTTCGGAGTCCTCATTTTGGAGATTATAAGTGGCAAGAAGAATAGCTCTTTCTATCAAACAGACGGTGCTGAGGATCTAATGAGCTATGCTTGGACACTTTGGAAGGATGGAGCACCCTTGGAACTGATGGACCCCATATTAAGGGAATCCCATACCCCAAATGAAGTTATCAGAAGCATCCATATTGGTTTGCTCTGTGTCCAAGAAGATCCAGCAGACAGGCCAACAATGACAGAAATAGTTCTTATGCTAGACAGTAACACTGTTACTATACCAACTCCGAAGCAGCCTGCATTTTTCATCCATAGTGGAACTGATCCAAACATGCCAAAGGCGCAGTTTGATCAATCAATACCAGTGTCTATGAATGAGATGTCGATTAGTGAAATGGATCCTAGATAA 2001 0.4548 MPSLKLVLLFTAVSFISFGSIKAQDAPVYLYKNCSTNSTTTANSAFQLHLKTLLSSLSSNATATTEFYNTTVTGRSPSDTVYGLFMCRGDVAPALCRQCVVNATQRLVSECSLSKQAVIWYDECTVRYSNRSFFSTVDTRPRLGLLNTANISNQESFMRLLFQTINKTADEAANSSIGSKKYATNQATISGFQSLYCLAQCTPDLSPQDCRRCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRNTTSPSPTPTPSPPLLVPPTAPANSGGNSGISAGTIIAIVVPITVAVLLFIVGVCFLTRRVRKKHDSVPEGKTAYDISTVESLQFDFGTIEAATDKFSVDNKLGEGGFGEVYKGTLPSGQQIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYTLFDPEKQRELDWARRYRIIGGIARGIQYLHEDSRLRIIHRDLKPSNILLDGDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSVKSDVYSFGVLILEIISGKKNSSFYQTDGAEDLMSYAWTLWKDGAPLELMDPILRESHTPNEVIRSIHIGLLCVQEDPADRPTMTEIVLMLDSNTVTIPTPKQPAFFIHSGTDPNMPKAQFDQSIPVSMNEMSISEMDPR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi719g00007 666 Pfam Protein kinase domain 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi719g00007 666 SUPERFAMILY Protein kinase-like (PK-like) 331 639 IPR011009 -
Sebi719g00007 666 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Sebi719g00007 666 FunFam cysteine-rich receptor-like protein kinase 10 422 624 - -
Sebi719g00007 666 ProSiteProfiles Gnk2-homologous domain profile. 28 133 IPR002902 -
Sebi719g00007 666 FunFam Cysteine-rich receptor-like protein kinase 10 308 421 - -
Sebi719g00007 666 ProSiteProfiles Protein kinase domain profile. 346 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi719g00007 666 SMART serkin_6 346 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi719g00007 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 27 132 - -
Sebi719g00007 666 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Sebi719g00007 666 Pfam Salt stress response/antifungal 34 130 IPR002902 -
Sebi719g00007 666 Pfam Salt stress response/antifungal 150 245 IPR002902 -
Sebi719g00007 666 Gene3D - 26 133 IPR038408 -
Sebi719g00007 666 Gene3D - 142 247 IPR038408 -
Sebi719g00007 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Sebi719g00007 666 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Sebi719g00007 666 Gene3D Transferase(Phosphotransferase) domain 1 422 626 - -
Sebi719g00007 666 CDD STKc_IRAK 352 618 - -
Sebi719g00007 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 665 - -
Sebi719g00007 666 FunFam Cysteine-rich receptor-like protein kinase 25 141 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi719g00007 Sebi-Chr719 70416 73303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi719g00007 7 666 Receptor kinase-like Gene Family AT4G05200 52.717 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi719g00007 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi719g00007 - - gmx:100305391 1045.8