Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi719g00001 ATGGGTACCCAAGAATCTCTGTTAGTATTAGACAATCCGAGAAAATCCCTTTCCAAAACTCTCTGGTTACTCCTCTCTGTAGCTTCTGTTGTATGCTCATCAGTCCTTCTTGCTTCTTATCTCATCAAACCCACCTCCTTGCCTCATCACCATGCCTGTGAACATGCACTTGATTCACCATCCTGCTTAGCCCATGTCTCACAACTAACTCAAGGCCCGATCTTCACCAGTACTAACAAATTCAATTTGCTCCAATCCTTCCTAATGAAGTCCACCTCACACATTAAGAAAGCTATGGACACAGCCAATGCTATCAAACTCAAGATTAACAATCCGAAGGAGGAAGCAACTTTGCACAACTGTGAACAGCTAATGGACTTGTCCATGGATAGAGTTTGGGACTCCATGATGGCTCTAACAAAAGAGGCCACTGATTCGCTGCAACTGCAAGATGCACACACGTGGCTAAGCAGTGTGCTCACTAACCATGTCACTTGCTTGGATGGATTAGAGGGCTCAGCCCGGGCCTTGATGGAGGCCCAGCTTCAGGACCTGATAACCAGAGCAAGGACCTCCCTGGCCTTGCTTGTTGATGTTTTGCCCCCAAATCCAGGCCTCATTGATGAGCCACTCAGCATTGGGGATTTCCCCTCATGGGTGACAAGCAAGGATCGGAGGCTTTTGGAGTCTTCAGCTGGGGAGATCAAGCCCAATGTTGTGGTGGCTAAGGATGGGAGTGGCAAGTTCAAGACTGTTGCTGAGGCTGTGGCATCCGCACCCGACAACAGTAAGACAAGGTACGTTATCTATGTCAAGAAGGGAACGTACAAAGAAAATGTTGAAATTGGTAAGAAAAAGAAGAATGTGATGCTTGTGGGTGAAAGTATGGATGCAACGATAATCACCGGCAGCTTGAACTATGTCGATGGAACAGGCACCTTTGATACTGCCACTGTTGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATATGTTTTCAAAACGCAGCAGGTCCACAGAAGCATCAGGCAGTGGCTCTCCGCGTCGGCGCTGACATGTCCGTCATAAACCGCTGCCGCATTGACGCCTATCAAGACACTCTCTACGCCCACACCAACAGGCAGTTCTACCGTGACTCTTACATTACCGGCACTGTGGATTTCATCTTTGGAAATGCAGCTGTGGTCTTCCAGAAGTGCAAGCTGGTGGCCCGAAAGCCCATGGATAACCAGAAAAACATGATCACGGCCCAAGGACGAATAGATCCAAACCAGAACACAGGAACATCAATTCAGCAATGTGACCTGACACCAAGCTCAGATCTTAAGCCCGTTGTGGGCTCCATAAAAACTTATCTGGGCCGCCCATGGAAGAATTTCTCTAGAACCGTTGTGATGCAATCCTTTCTGAGCACTCATATTGACCCAACAGGATGGGCAGAATGGGATGCCGAGCATAAGGACTATTTGAAAACGTTATATTATGGAGAATACATGAACAAAGGGCCTGGTGCTGGTATAAGCAAGAGAGTGAATTGGCCCGGTTACCATGTCATCAAAAGTGCAACAGAGGCCAGTAAGTTTACAGTAACACAGCTCATCCAAG 1606 0.4776 MGTQESLLVLDNPRKSLSKTLWLLLSVASVVCSSVLLASYLIKPTSLPHHHACEHALDSPSCLAHVSQLTQGPIFTSTNKFNLLQSFLMKSTSHIKKAMDTANAIKLKINNPKEEATLHNCEQLMDLSMDRVWDSMMALTKEATDSLQLQDAHTWLSSVLTNHVTCLDGLEGSARALMEAQLQDLITRARTSLALLVDVLPPNPGLIDEPLSIGDFPSWVTSKDRRLLESSAGEIKPNVVVAKDGSGKFKTVAEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNVMLVGESMDATIITGSLNYVDGTGTFDTATVAAVGDGFIAQDICFQNAAGPQKHQAVALRVGADMSVINRCRIDAYQDTLYAHTNRQFYRDSYITGTVDFIFGNAAVVFQKCKLVARKPMDNQKNMITAQGRIDPNQNTGTSIQQCDLTPSSDLKPVVGSIKTYLGRPWKNFSRTVVMQSFLSTHIDPTGWAEWDAEHKDYLKTLYYGEYMNKGPGAGISKRVNWPGYHVIKSATEASKFTVTQLIQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi719g00001 535 SUPERFAMILY Pectin lyase-like 236 534 IPR011050 -
Sebi719g00001 535 Gene3D - 232 535 IPR012334 -
Sebi719g00001 535 PANTHER PECTINESTERASE 35 534 - -
Sebi719g00001 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 195 IPR035513 -
Sebi719g00001 535 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Sebi719g00001 535 Pfam Pectinesterase 238 535 IPR000070 GO:0030599|GO:0042545
Sebi719g00001 535 NCBIfam pectinesterase inhibitor domain 20 175 IPR006501 GO:0004857
Sebi719g00001 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 199 IPR035513 -
Sebi719g00001 535 SMART PMEI_2 43 195 IPR006501 GO:0004857
Sebi719g00001 535 FunFam Pectinesterase 232 535 - -
Sebi719g00001 535 CDD PMEI-like_4 55 197 - -
Sebi719g00001 535 Pfam Plant invertase/pectin methylesterase inhibitor 51 185 IPR006501 GO:0004857
Sebi719g00001 535 ProSitePatterns Pectinesterase signature 1. 263 282 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi719g00001 Sebi-Chr719 2311 4011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi719g00001 9 535 Carbohydrate Esterase AT1G11580 55.102 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi719g00001 K01051 - gmx:100815836 802.357