LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi718g00009	ATGAGAACAGAATCTAATAGGAAGAGTGACGGTGTCGAACCCGAAAAATATAAGTCAACTCCTAAACATAATATTGATTTTGATGAGATTGTTGATGGTTATAAAAAGATATCTGAACTTACAGATGAGGATATCAGAGCTCTTGAGTTTGATTCTGAAGAGGATGCATATGTTTTCTACCGTGAGTACGCAAAATTCATAGGGTTTGCTGTTAGGAAACATGATGTGTATAGAGATCGTAATGATGTAATTACAATGAGACAATTTGTATGTAACAAGGAGGGAGAGAGAAGTGGGAAGCACCTTAATAGGACTGATAGAAAGAGGGAGGCAAAGGCCATTACACGAACAAGATGTAATGCTAGACTCCAAATTCATTTAGATTATAAGAGTAGAAAGTGGATTGTTGGTTCTTTTGAGCCAGCCCACAACCATGAATTGATTCTTGCTAGTATGGTTCATTTGTTGCCAGCTTATCGTGGGTTGAGTGTAGCTAATAAGGCACATGTTGACGGTCTATATCATTACGGTGTTAGGACTTTCCATATTATGGGGCTTATAATGGGTCAGAAGGGGGGTTATTCTGATCTTGGATTCTGTAAGAAGGATTTGTACAATCACATTGATAAGGTGAAGAGGGCAAAAATTGAGGATGGTGATGCTTTTGCAGCTTTGTGTTACCTTCAGGAAAAGACAACTTCTATCTGTGAAGGAATAAACTCTTTCATTAAGAGAGTTGTTAATGACTATAAACACAATGAGTTAACCTCAGATTTCAAGTCTACATACACTCAACCTATGATGACAACTGCATTGGAAAAGTATGAACTTGAAGCTTCTAATGTGTACACGAGGAATAAGTTCTTTGATGATCGTAAAGAAATCGAGAAAGTTGCTGCCATAAATGTCATTGATAGGTCAGATGTTGGTAATATAGTTAGAATGAAGATGAATAAATTTGGAAGTCCTGATGTTGAAAATGTTGTTCAGTTAGATAAGTCCAATGGGCACACAGTTAGGACATGCAAAAAGTATGCCACTCATGATCAGTTGGATACAGTTCTTGAAGAGCAATCATCTGTTGAGACTGATGAAGAGTCGAGAAACAAAAGTTTGTCTGTGAATCCTCATTTTTCCCAGGATTTGAATGATGTATCAATTTCTGTTGATCATAATCGTGCTTCGGACAAGGGTCAATCTAAGAAGAAAAGGAAGCATAATGAAGGAGTGAAACTGACACAAGAATCAGTGAATGAATTGAGGTCCAGTGATGTAAATACGACTTATGAGAGTGGGATGAGATCCAAATTCATACTAAATCTGATTTCAATGTCAATCAGATGA	1344	0.3698	MRTESNRKSDGVEPEKYKSTPKHNIDFDEIVDGYKKISELTDEDIRALEFDSEEDAYVFYREYAKFIGFAVRKHDVYRDRNDVITMRQFVCNKEGERSGKHLNRTDRKREAKAITRTRCNARLQIHLDYKSRKWIVGSFEPAHNHELILASMVHLLPAYRGLSVANKAHVDGLYHYGVRTFHIMGLIMGQKGGYSDLGFCKKDLYNHIDKVKRAKIEDGDAFAALCYLQEKTTSICEGINSFIKRVVNDYKHNELTSDFKSTYTQPMMTTALEKYELEASNVYTRNKFFDDRKEIEKVAAINVIDRSDVGNIVRMKMNKFGSPDVENVVQLDKSNGHTVRTCKKYATHDQLDTVLEEQSSVETDEESRNKSLSVNPHFSQDLNDVSISVDHNRASDKGQSKKKRKHNEGVKLTQESVNELRSSDVNTTYESGMRSKFILNLISMSIR	447

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi718g00009	447	MobiDBLite	consensus disorder prediction	1	21	-	-
	Sebi718g00009	447	MobiDBLite	consensus disorder prediction	372	389	-	-
	Sebi718g00009	447	PANTHER	OS01G0519700 PROTEIN	45	231	-	-
	Sebi718g00009	447	MobiDBLite	consensus disorder prediction	357	416	-	-
	Sebi718g00009	447	MobiDBLite	consensus disorder prediction	390	412	-	-
	Sebi718g00009	447	Pfam	FAR1 DNA-binding domain	59	148	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi718g00009	Sebi-Chr718	251942	254647	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Sebi718g00009		FAR1	4.3e-21	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi718g00009	-		-	ccaj:109792835	228.024