Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi716g00027 ATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAAAAATGTGTCTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCTCACAGAGTCTTTGGTGCCAGCAACATCATCAAGTTCTTACAGGAGCTTCCAGAGTCTCAAAGAGCAGATGCAGTGACTAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCGGTTTATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAACAGGTCAATGAGCTTCAAGCACAATTAGCCAAGGCACAAGCTGAGCTTGTAAACATGCAATTGCAGCAAGCCAATCTTGTGGCTTTAATTTGCATGGAAATGGCACAAAGTCCACAGGAATCACCACAACAATCAGTGGATAATTTCATTACAAGTCCTCCACACAGCACTGGCTATCAAAATGGTATGAACTTCCTTGAGGAGAACACTAGCCTAAACTCATTGTGGGAGCCACTTTGGACATGA 507 0.4497 MSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQLQQANLVALICMEMAQSPQESPQQSVDNFITSPPHSTGYQNGMNFLEENTSLNSLWEPLWT 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi716g00027 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 131 - -
Sebi716g00027 168 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Sebi716g00027 168 Coils Coil 82 109 - -
Sebi716g00027 168 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi716g00027 Sebi-Chr716 412744 414142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi716g00027 1 168 AS2 family AT1G07900 67.251 9.84e-79 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi716g00027 LOB 1.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi716g00027 - - gmx:100789504 308.145