Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi716g00009 ATGTGGGCTAAGAAGAATGTTGTTGGAAAAGAACAGGTGGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCCGGGGCCACTGATCTAGCATCAAAGGGACAAGGTGCATCAGATAGTAGTAATGTGAAGGTTAAAGGTGAAATTGACGATTCCTTTCAATCAGATCCAAAGATAAAGATTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCAAATGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAGCCTATGGAAGGCACCCCACCAGTTCCTGATAAATTTTATTGTGAAATCTGCCGACTCAATCGTGCAGACCCGTTTTGGGTTTCGGTGGCGCATCCTTTGCTTCCTGTGAAGCTGACCACAACCAGTATTCCAACTGACGGAACCAACCCGGTGCAGAGTGTGGAGAGAACATTTCAACTTACAAGAGCAGACAAGGACTTGGTATCAAGACCAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGCATTGTTAAAAGGCGCAACATGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCGTTTTGAAGATGCTCTTGCACGCGTTTGTCGTTGTGTTGGGGGCGGAAATGCAGCTGACAATGCTGATAGTGACAGTGATTTAGAAGTGGTTTCAGATACTTTTAGCGTTAATCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAAATTGCTGGAAGATTCAAACCTTGTATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATTCACTGGAGAATATCGTCATTGACCCGTATTTCAATCGCATCACTTCTATGATGGTAAATTGTGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGATCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGCCTGGATTTAGGGGATCTTGCACAATGGCACTTTCCTGATGGATCCCTCTGTGTTTCTACTGGTGGAGATATCAAAAGAGTAGAAACATTGAAGCAGGTCAAACAGGAAGGTGTTTCTGACAGTCCTAATGGTTTAAAACTTGGCATCAGAAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGACACAAACACCTCTTCTGGTAATAAATTAAAAGAGATTTTTGGAAATCCTGAACAGGTTGTTATTCCGATGAGCAGCAGCGCCACTGGAAGTGGCAGGGATGGTGATGATCCTAGTGTAAACCAGGGTGGTGGTGGGCATATTGATTATTCTACTACCAATGGGATTGAGATGGATTCGCTGGGTCTCAATAATGTTGATTTAACATATGGATATACTGCACATAACACTTCCGCTCAGGTGGGGGGTGCAGAAGTAATTGTTCTTAGTGATTCTGAAGAAGACAATGATATATTGTTATCTCCTGCAATTGCATATAAGAGCAACCAAAATGATACTGCAGATGGTTACTCCATGCCACCGCCTGGACTTGTTAATTCATATACTGAAGATCAGAATCTTGGTGGAAATTCATGCTTGGGACTTTTTCCTAATGAAGATGATTTTGGGATGTCTTCCCTGTGGTCGTTGCCTCCTGGAACTCAGGCTGGTCCAGGATTCCAATTGTTTGGTTCTGATGCAGATGTGTCAGATGCTTTGGTCCATTTGCAACATGGTCCTATTAATTGCACATCATCACTGAATGGTTATGCATTGGCTCCAGATACTGCTTTGGGATCGAGTAGTCTCTTACAAGATCCCTCTAATGGTCGCTCAGATGCTGACTTAAATGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTTCTCCCCACAAGACCAGCTGA 2157 0.4279 MWAKKNVVGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSNVKVKGEIDDSFQSDPKIKIRCLCGSSLETEDLVKCDDPRCQMWQHISCVIIPEKPMEGTPPVPDKFYCEICRLNRADPFWVSVAHPLLPVKLTTTSIPTDGTNPVQSVERTFQLTRADKDLVSRPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTVCDARIFCLGVRIVKRRNMQQILNLIPKESDGERFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYSLENIVIDPYFNRITSMMVNCGEDVTEVEVKPDGSWRVKAKSESERLDLGDLAQWHFPDGSLCVSTGGDIKRVETLKQVKQEGVSDSPNGLKLGIRKNRNGVWEVSKPEDTNTSSGNKLKEIFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTTNGIEMDSLGLNNVDLTYGYTAHNTSAQVGGAEVIVLSDSEEDNDILLSPAIAYKSNQNDTADGYSMPPPGLVNSYTEDQNLGGNSCLGLFPNEDDFGMSSLWSLPPGTQAGPGFQLFGSDADVSDALVHLQHGPINCTSSLNGYALAPDTALGSSSLLQDPSNGRSDADLNGGLVDNPLAFAGDDPSLQIFSPHKTS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi716g00009 718 CDD SP-RING_Siz-like 310 359 IPR031141 -
Sebi716g00009 718 FunFam E3 SUMO-protein ligase SIZ2 283 397 - -
Sebi716g00009 718 MobiDBLite consensus disorder prediction 488 504 - -
Sebi716g00009 718 ProSitePatterns Zinc finger PHD-type signature. 65 115 IPR019786 -
Sebi716g00009 718 MobiDBLite consensus disorder prediction 464 480 - -
Sebi716g00009 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 123 IPR013083 -
Sebi716g00009 718 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 1 611 - -
Sebi716g00009 718 Pfam PHD-finger 64 116 IPR019787 -
Sebi716g00009 718 SMART PHD_3 64 116 IPR001965 -
Sebi716g00009 718 CDD PHD_Bye1p_SIZ1_like 64 115 - -
Sebi716g00009 718 ProSiteProfiles Zinc finger SP-RING-type profile. 296 379 IPR004181 GO:0008270
Sebi716g00009 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 397 IPR013083 -
Sebi716g00009 718 MobiDBLite consensus disorder prediction 464 516 - -
Sebi716g00009 718 Pfam MIZ/SP-RING zinc finger 309 357 IPR004181 GO:0008270
Sebi716g00009 718 SUPERFAMILY FYVE/PHD zinc finger 55 119 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi716g00009 Sebi-Chr716 116021 121098 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi716g00009 PHD 4.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi716g00009 - - gmx:100793735 1291.17