Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi715g00005 ATGTACGGCAGCTGCAGCGACAGCGACAATGACAATCAACTCCATGGCCATGACAATGATGACACGTTGGACTTCCGAAACCTTAAGGTTGTCTCTGCCGTGGGACGCGGCGCGAAGGGCGTCGTGTTCCTCGCGAGAACCTACAACGCGTCAAACGGGGAATGGCTTGCCTTGAAAGCCATTTCCAAAGCCTTGCTTCTGAAGAAAAACAAGAACCGCAATAGCGAATGCAAGAGGGTCTCGTTTGAACAACAAATACTACGTCGTTTCGATCACCCATTATTACCGCGATTACGAGGGGTTTTTGAGACCCAACAACTCAAAGGATTCGCCATCGACTATTGCCATGGTGGGACTTTGCACTCTCTTCGTAAGAAGCAAACGGAGAAGACATTCTCTGAAGAAACCATAAGGTTTTACGCAGTTGAATTGATCTTGGCGTTGGAGTATTTGCATAATTTGGGAGTAGTGTATAGGGATTTGAAGCCTGAGAACATCATGATCCAACAAACAGGTCATATAATGCTTGTGGATTTCGATCTCTCCAAGAAGCTGAACCCCAAGTCACCAAACTCGCTAAGTTGTAGCTCATCCCCAGGTTCTGACTCGGAGAAAGACTTGAGGAAGCGACGATTCTCGCGGTTCTACTGTTACTGTCACTCGGGGATGCTACTGCATGACTCAGAGAGTCAGCTCGACACCAACTCAGCGCGTCGAAGCGAATCGGACTCTGTGGAAAAGTCCAACTCGTTCGTAGGAACAGAGGATTACGTAGCACCAGAAGTTGTATCTGGTGAAGGACACAACTTTGGGGTAGATTGGTGGTCATTCGGCGTCGTTTTATATGAGATGCTTTACGGGATGACACCATTTAAGGGCACAAATAGGAGAGAAACGTTTCACCGGATTTTAACGAAGGAGCCTGATCTGACTGGTGAAACGATGCCGTTAAGGGACTTGATTGGGAGATTACTTGAGAAAGAACCTAACCGTAGGATCGAGGTGGATGAAATCAAGGGCCATGATTTCTTTAAAGGTGTGAAGTGGGATACGGTCTTGGAGATTGCACGTCCACCATATATTCCACAGAGTGAGGTTGAGGACACAAAGGGCTTTTCAAGAAAAGATGTGGAGTCATTTGTGCATGGGATATTTTTCCCTAAGAATAATAATGGTGAAGGAGAGAAAAATAATGAGGTGGTGAAAAAGAAGGATGAAAAGAGGAAAGAGGACAATAATAATCACAATAGTAATAAGCAAGTGTGGGTTGACAAGTTGAATCAGAATCCTAATAAGGACGAAAATTTTTTAATTTTTTGA 1320 0.45 MYGSCSDSDNDNQLHGHDNDDTLDFRNLKVVSAVGRGAKGVVFLARTYNASNGEWLALKAISKALLLKKNKNRNSECKRVSFEQQILRRFDHPLLPRLRGVFETQQLKGFAIDYCHGGTLHSLRKKQTEKTFSEETIRFYAVELILALEYLHNLGVVYRDLKPENIMIQQTGHIMLVDFDLSKKLNPKSPNSLSCSSSPGSDSEKDLRKRRFSRFYCYCHSGMLLHDSESQLDTNSARRSESDSVEKSNSFVGTEDYVAPEVVSGEGHNFGVDWWSFGVVLYEMLYGMTPFKGTNRRETFHRILTKEPDLTGETMPLRDLIGRLLEKEPNRRIEVDEIKGHDFFKGVKWDTVLEIARPPYIPQSEVEDTKGFSRKDVESFVHGIFFPKNNNGEGEKNNEVVKKKDEKRKEDNNNHNSNKQVWVDKLNQNPNKDENFLIF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi715g00005 439 FunFam Serine/threonine-protein kinase OXI1 246 363 - -
Sebi715g00005 439 ProSiteProfiles Protein kinase domain profile. 28 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi715g00005 439 FunFam Serine/threonine-protein kinase OXI1 119 187 - -
Sebi715g00005 439 Gene3D Phosphorylase Kinase; domain 1 28 118 - -
Sebi715g00005 439 MobiDBLite consensus disorder prediction 416 439 - -
Sebi715g00005 439 Gene3D Transferase(Phosphotransferase) domain 1 233 363 - -
Sebi715g00005 439 Gene3D Transferase(Phosphotransferase) domain 1 119 191 - -
Sebi715g00005 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Sebi715g00005 439 SUPERFAMILY Protein kinase-like (PK-like) 27 369 IPR011009 -
Sebi715g00005 439 Pfam Protein kinase domain 245 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi715g00005 439 Pfam Protein kinase domain 30 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi715g00005 439 SMART serkin_6 28 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi715g00005 439 MobiDBLite consensus disorder prediction 395 415 - -
Sebi715g00005 439 MobiDBLite consensus disorder prediction 387 439 - -
Sebi715g00005 439 ProSiteProfiles AGC-kinase C-terminal domain profile. 345 439 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi715g00005 439 PANTHER FLIPPASE KINASE 1-RELATED 18 370 - -
Sebi715g00005 439 MobiDBLite consensus disorder prediction 230 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi715g00005 Sebi-Chr715 141722 143420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi715g00005 22 439 AGC Kinase Gene Family AT3G25250 52.887 4.09e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sebi715g00005 Pkinase 5.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi715g00005 K20714 - gmx:100813693 584.719