Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi714g00028 ATGGGGAAGAAGCAGCACAGCAAAGACAGGATGTTCATCACTAAAACCGAATGGGCAACGGAATGGGGAGGCGCCAAATCCAAAGAGAATCGCACCCCTTTCAAACGTCTTCCTTTCTATTGCTGCGCGCTTACATTTACGCCGTTTGAGTATCCAGTTTGCACAGCTGATGGAAGTGTATTCGATGTTATGAACATTACTCCCTATGTTATAAAGTATGGTAAACACCCTGTCACTGGAACTCCGCTGAAGCAGCAAGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCACTGTCCAGTACTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCGGTGAAGACTACAGGAAATGTGTTCTGCTATGAGGCTGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTGCTCACCGACGAGCCATTTACTAAGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACAGCAAGGTTCTTTATGATTTTGATCATGTTAAACACAATTTGAAAGTTGATGATGAAGAACTACAGAAAATGAGTTCAGATCCAACCTATAACATAAATATGACGGGTGATATCAAGCAAATGCTTAAGGAGCTTGGAACTGAGAAAGGAAAGGAAACCGCAATGCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCCGCCATCTTAGCTGCAAGGTCACATGTTAAAGAGGATTCCAAATCAAATCCAAATGGAGAGGGCAATGCTCCTCAGGCTTTCAGTATTGTAGATGCTGCATCTGCCTCAGTACATGGAAGAAGTGCTGCTGCTGCTAAAGCCTCATCAGGTGATAAAACTGCTGCTAGAATAGCTATGCACAAAGCTGGTGAAAGGGCACCAGTGAATGCAAAGCTGGTAAAGAGCCGTTTCACTACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACCACACATGGTGATTTGAATATTGAGCTGCATTGTGATATAACGCCCAGGGCATGTGAGAACTTCATCACACTTTGTGAACGTGGATATTACAACGGAGTTGCTTTTCATAGAAACATAAGGAATTTTATGATACAAGGTGGTGATCCTACTGGCACTGGTAGAGGAGGTGAATCAATATGGGAAAAGCCTTTTAAAGATGAACTCAACTCCAAATTAATTCACTCTGGAAGGGGTGTGGTCAGCATGGCAAACAGTGGCCCCCACACTAATGGTTCCCAGTTTTTTATCTTGTACAAGTCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGCGTAGTTGTCGGTGGCTTGACTACACTAGCAGCAATGGAAAAGGTTCCTGTAGATGACAGTGACAAACCTCTGGAGGAAATCAAGATAACAGGTGTCACAGTTTTTGTAAATCCTTACACAGAACCAGATGAGGAGGAAGAGAAGGATAATGCCAAAGAGAAGAATGCAGTGGATGAAGATAATGATAAGGTTGGATCATGGTATAGTAATCCGGGCGCTGGAACATCTGAATCTGGAGGTACGGCGGTTGGCGGTGGTGTTGGCAAGTACTTGAAAGCTAGGAATGCTCAACAAGCTCAATCTGCTACTGTTGACACTGGTACAGCCGTTGTAGGAAAGAAAAGAAAAGTAGGAGTAGTCAGTAGTGAATTTAAAGATTTTTCTGCATGGTAA 1794 0.4214 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCALTFTPFEYPVCTADGSVFDVMNITPYVIKYGKHPVTGTPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLYDFDHVKHNLKVDDEELQKMSSDPTYNINMTGDIKQMLKELGTEKGKETAMHGGGGGKAQKERAAALAAILAARSHVKEDSKSNPNGEGNAPQAFSIVDAASASVHGRSAAAAKASSGDKTAARIAMHKAGERAPVNAKLVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWEKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGVVVGGLTTLAAMEKVPVDDSDKPLEEIKITGVTVFVNPYTEPDEEEEKDNAKEKNAVDEDNDKVGSWYSNPGAGTSESGGTAVGGGVGKYLKARNAQQAQSATVDTGTAVVGKKRKVGVVSSEFKDFSAW 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi714g00028 597 CDD cyclophilin_RING 350 508 - -
Sebi714g00028 597 MobiDBLite consensus disorder prediction 512 528 - -
Sebi714g00028 597 SUPERFAMILY RING/U-box 37 104 - -
Sebi714g00028 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Sebi714g00028 597 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Sebi714g00028 597 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 344 515 IPR044666 -
Sebi714g00028 597 MobiDBLite consensus disorder prediction 507 548 - -
Sebi714g00028 597 Gene3D - 331 515 IPR029000 -
Sebi714g00028 597 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Sebi714g00028 597 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Sebi714g00028 597 SUPERFAMILY Cyclophilin-like 350 509 IPR029000 -
Sebi714g00028 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Sebi714g00028 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Sebi714g00028 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Sebi714g00028 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Sebi714g00028 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Sebi714g00028 597 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Sebi714g00028 597 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Sebi714g00028 597 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Sebi714g00028 597 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Sebi714g00028 597 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi714g00028 Sebi-Chr714 368914 373672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi714g00028 1 597 U-box Gene Family AT5G67530 75.415 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi714g00028 K10598 - gmx:100819923 1042.72