Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi714g00008 ATGAAGCCCATCCAAAATGTTAACAATCAAAATAACTGGTTGGGTTTCTCCCTCACTCCCCAAATCAATATAGGTGTTCCTTCACAATCACACCCTTCCTCTGCTGTTGCTGCTGAAACACTTCCACCAAGCTTTTACCACCCTACACTTGTTCATAACTATGGCTTTTACTATGGACTAGAAGGTGAAAATGTTGGACTGTATTCAGCCTTGCCTATCATGCCATTCAAATCTGATGGCTCTTTATATGGAATAGAATCTCTGAGTAGATCACAAGCACAAGCATTGGCAACTACTTCAACACCAAAACTGGAAACTTTCTTTCGTGGCCAGACGATGACAATCCCTCAATATGAATGCAATACCAACAAAGAAGCAATGCATCTGAGCTTAGAAAGTATGTTTTACAACCAAACCTTGTGCCATGACCCAAATAACCTAAATCATGTACATGAGAATATTAGCCAGCAACAGCTCTCATATAACTCTTCCTTAGGAAACCATGATTTGATGTTAGAAGGGTCCAAGCAAAATCAGTTTTCAGACAGTGTCCAGCTCCCAAACATGGCTGACGATCTGAAGAATTGGGTCTCAAGGGACTTTGCAGCTAGCCATGCACAGCAGTCAAAGATGATTGTCCCAATAGAGGATAATAGAGGCGAATCCGGGTCCATTGGATCAATGACATATGGGGATTTACAGTCATTGAGCTTGTCCATGAGTCCTACCTCACAACCAAGCTGTGTTACAAGTTCACAACAGACAACACCACCCACTCTCATTGATTCTGTTGTTGCCTTGGATACCAAGAAACGGGGTCCTGAAATGGTGGACTTGGAGCAAAATCAGAAGCAAATGGTTCTTAGGAAATCCATAGACACCTTTGGGCAGAGAACATCTCAATATAGAGGTGTAACAAGGTTGGTTGTCCTCTGGTTTCTTACAGGGGGTTATGATGTGGAAGAAAAGGCTGCAAGAGCATATGATATGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATTAACTTCCCATTGGAGAATTATCAAAAAGAACTTGAGGAAATGAAGAATATGACCAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCTTCCATATACAGAGGAGTAACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAATAAAGATCTATATCTTGGAACATTCAGTACCCAAGAGGAAGCAGGTGAGGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTTACTAATTTTGATATAACAAGATATGATGTGGAAAAAATTATGGCAAGTAACAACCTTCTTAGTAGTGAACTAGCCAGGCGTAACAAAGTGATGGATGGTGGAACTGGGAAAGAGGCAATAAACCATGAACCTTTAACATGTGATGACACTCTAATAATGCAGAAGAGGTGCAAAAGCCAATCAGAGTGGGAAATGGTTCTTTATCAAGAAGAAGCAGAGGAATTGAGTAAGATGGGAAGACAAGTACTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGCAGCTCAAGAGAAGAAAGTCCAGATAAGACAAGCTTGCCAGTGCTCTTTGATCAAATGCCTTCAACAGCTTCTAAATTATTGGCTACTATTTCATCAACTAGTAATGTTGGTACTTGGGAGCCATCTTCTCATCTTAGGCCTGCACTTTCTTTGCCTCAGATGCCAGTTTTTTCTGCTTGGACCGATGCATAA 1779 0.4177 MKPIQNVNNQNNWLGFSLTPQINIGVPSQSHPSSAVAAETLPPSFYHPTLVHNYGFYYGLEGENVGLYSALPIMPFKSDGSLYGIESLSRSQAQALATTSTPKLETFFRGQTMTIPQYECNTNKEAMHLSLESMFYNQTLCHDPNNLNHVHENISQQQLSYNSSLGNHDLMLEGSKQNQFSDSVQLPNMADDLKNWVSRDFAASHAQQSKMIVPIEDNRGESGSIGSMTYGDLQSLSLSMSPTSQPSCVTSSQQTTPPTLIDSVVALDTKKRGPEMVDLEQNQKQMVLRKSIDTFGQRTSQYRGVTRLVVLWFLTGGYDVEEKAARAYDMAALKYWGPSTHINFPLENYQKELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAGEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKVMDGGTGKEAINHEPLTCDDTLIMQKRCKSQSEWEMVLYQEEAEELSKMGRQVLSNPSSLVTSLSSSREESPDKTSLPVLFDQMPSTASKLLATISSTSNVGTWEPSSHLRPALSLPQMPVFSAWTDA 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi714g00008 592 SMART rav1_2 301 351 IPR001471 GO:0003700|GO:0006355
Sebi714g00008 592 SMART rav1_2 381 445 IPR001471 GO:0003700|GO:0006355
Sebi714g00008 592 FunFam AP2-like ethylene-responsive transcription factor 380 441 - -
Sebi714g00008 592 SUPERFAMILY DNA-binding domain 313 347 IPR016177 GO:0003677
Sebi714g00008 592 CDD AP2 380 441 IPR001471 GO:0003700|GO:0006355
Sebi714g00008 592 ProSiteProfiles AP2/ERF domain profile. 381 439 IPR001471 GO:0003700|GO:0006355
Sebi714g00008 592 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 180 472 - -
Sebi714g00008 592 SUPERFAMILY DNA-binding domain 380 440 IPR016177 GO:0003677
Sebi714g00008 592 Gene3D AP2/ERF domain 309 347 IPR036955 GO:0003700|GO:0006355
Sebi714g00008 592 Gene3D AP2/ERF domain 381 441 IPR036955 GO:0003700|GO:0006355
Sebi714g00008 592 ProSiteProfiles AP2/ERF domain profile. 283 345 IPR001471 GO:0003700|GO:0006355
Sebi714g00008 592 Pfam AP2 domain 381 431 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi714g00008 Sebi-Chr714 126160 129385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi714g00008 6 592 AP2-EREBP Transcription Factor Family AT4G37750 42.768 3.62e-138 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi714g00008 AP2 1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi714g00008 K09285 - gmx:100787611 712.99