Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi713g00005 ATGAAAGCCACTAGTGATGGTGATGATGCCACTCCAGTTCAGGGGAGTGGAAATATAAAGGTCATGACCAACCATTCTATGTGTCGTTCAGGCCCTCCTTTGACAGCCATAGACAAGTTCTTATGGGGCCAACAAAGTCATACAAATGCAAGTGTTTTTGACAATCGATTCTCAACTTTTGCTTGTTCTGGTGCTTCAACTACATGTAGCTTTCTGTGGCATAATAACACTCAAGAAGCAAGTAACTTCATTGATCAACTCTTAGCAAATGAAGAGTCCCTGAATTGGACACACTACCATATCTCCACATTGTGCCAACAGAAAGAAGATATGCAAGTTTTAGGGAAGAGTAGTGTGAAAATGGGAAGAAGGCCTAAGAAAGGATCTTCTGTGTCTTTGATCAAAGGACAATGGACTGAAGAAGAAGACAGGAAACTGTTAAAGTTGGTGAAGCAACATGGTGTAAGGAAATGGTCTCAAATAGCTGACAAGTTGGATGGAAGAGCTGGCAAGCAGTGTCGAGAGAGATGGAACAATCATCTGCGGCCTGATATTAAGAAAGATAATTGGAGTGAAGAAGAAGAGAGGATATTAGTAGAAATGCATGCTAAGATGGGAAATCGTTGGGCACAGATTGCAAAGCGGATTCCAGGAAGAACAGAGAATGCCATAAAAAACCATTGGAATGCCACTAAGAGGAAGCTTAATTCAAAGAGAAAGAACAAAAAGACAGCAAGCTCCAATGGAAAGCCACAATCCTCTATCCTTCAAAACTATATCACTCAAACTAGCTCCACAACAATAATCTCTGACTCTGACCCTGCTGTAACAAAACAATCCCACCTTCAGCTCTCTGATTCTATTACCAATGACAATTTCTCATCACCACTAATAGCTGATCACCCATATGAAGATGATGAGTTACTCTTCATGCAACAACTTTTCAAGGACAATCAGACCCAACGACAACCACTTGTCCCTGATCAAAATGGGTTTATTCATTCCAATGCTAAGCCAAACTCATATAACAATGTGTACTTGGATGAGAGTCTTATTCTTAGAAAGACTCCTCCCACCCCTACCATCAATTCTGATCATGTCTATCTTTCTCACTTGCTGAATGGAACCGCCACTTCATCACTTTGCTATAATTATGGGATTCAGTACCAGAACATGGACTTGCAATTGGAGGATCAAAATTCTTCAGATGGAAAGAAAGAGATGGATTTGATAGAGTTGGTTTATTCTGCTCAATTTTTCCACTAG 1266 0.4036 MKATSDGDDATPVQGSGNIKVMTNHSMCRSGPPLTAIDKFLWGQQSHTNASVFDNRFSTFACSGASTTCSFLWHNNTQEASNFIDQLLANEESLNWTHYHISTLCQQKEDMQVLGKSSVKMGRRPKKGSSVSLIKGQWTEEEDRKLLKLVKQHGVRKWSQIADKLDGRAGKQCRERWNNHLRPDIKKDNWSEEEERILVEMHAKMGNRWAQIAKRIPGRTENAIKNHWNATKRKLNSKRKNKKTASSNGKPQSSILQNYITQTSSTTIISDSDPAVTKQSHLQLSDSITNDNFSSPLIADHPYEDDELLFMQQLFKDNQTQRQPLVPDQNGFIHSNAKPNSYNNVYLDESLILRKTPPTPTINSDHVYLSHLLNGTATSSLCYNYGIQYQNMDLQLEDQNSSDGKKEMDLIELVYSAQFFH 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi713g00005 421 MobiDBLite consensus disorder prediction 233 256 - -
Sebi713g00005 421 SMART sant 134 183 IPR001005 -
Sebi713g00005 421 SMART sant 186 234 IPR001005 -
Sebi713g00005 421 Pfam Myb-like DNA-binding domain 138 195 - -
Sebi713g00005 421 CDD SANT 138 181 IPR001005 -
Sebi713g00005 421 FunFam Transcriptional activator Myb isoform A 134 187 - -
Sebi713g00005 421 ProSiteProfiles Myb-like domain profile. 130 181 IPR001005 -
Sebi713g00005 421 SUPERFAMILY Homeodomain-like 132 228 IPR009057 -
Sebi713g00005 421 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Sebi713g00005 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 236 IPR017930 -
Sebi713g00005 421 CDD SANT 189 232 IPR001005 -
Sebi713g00005 421 Gene3D - 134 186 - -
Sebi713g00005 421 PANTHER MYB PROTEIN-RELATED 123 253 - -
Sebi713g00005 421 Gene3D - 188 256 - -
Sebi713g00005 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 185 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi713g00005 Sebi-Chr713 54129 55988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi713g00005 30 414 MYB Transcription Factor Family AT5G58850 38.915 2.90e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi713g00005 Myb_DNA-bind_6 1.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi713g00005 K09422 - gmx:100786295 393.275