Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi712g00012 ATGGCTCCAATGACTCTCCCACCTGGATTTAGGTTCCACCCGACAGATGAAGAGCTTGTTGCTTACTACTTAGAAAGAAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTGCCAGACATGGAGTGGTATTTTTACAGTCCAAGAGACAGAAAGTACCCAAATGGATCAAGAACTAACAGAGCAACAAGAGCTGGTTATTGGAAAGCTACAGGGAAAGATAGGCCAGTGCATTCTCAAAAGAGAGCAGTTGGAATGAAGAAAACATTGGTATATTATAGAGGAAGAGCACCTCATGGGATTAGAACCAACTGGGTTATGCATGAATACCGCCTAATTGAATCATTTCCTGGTGCTGCTCTCTCATCTTTGAAGGATTCCTATTCATTGTGTCGAATTTTCAAGAAGACAATTCAAATCCCTGCAGCCAAATCTAAAGAAGAAGAACAAGCAGAGGATATTGCAGCAACAAATAAGAAGCAACCAATGTGGGTCTCAGAAGAACAAGTATTAGGGGAAGACTCAAGTGGCACTGAGATTTCAAGAGAAATGGAAACTGTAGATCATGAGAAAGTTGTTAATCATGAAAATCCTAAATTTCCATGTGATGCTTCATCTTCTGATGTCACTCAAGGAACATGTACCCCAACAGAAACTTGTATAGCAGATGATTTTCAACCACAATTTGCTTGTGATGAAGCAAACAGTAGTGCAGCTAATTATAATTCTTATCCAATGGGAATGGGCTACACTTCAAATCCATTTCAGGATATAGAAATACCTATGTATGCTGGCATGCATTATCAATTCCCACAGACACCTTTGGTGATGGAAGATTTCCCACAAGTAAATTTAATGGAGACAACAAAGTCAATGAAGCCTGAAATAATGACTGATGACTGCATGATATATGACAGATACAGGGACTGTTTGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTCATCTCAAGACCACTCTGTTGCTAATTTTCCAATGCTAGAATGA 1050 0.3914 MAPMTLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRPVHSQKRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESFPGAALSSLKDSYSLCRIFKKTIQIPAAKSKEEEQAEDIAATNKKQPMWVSEEQVLGEDSSGTEISREMETVDHEKVVNHENPKFPCDASSSDVTQGTCTPTETCIADDFQPQFACDEANSSAANYNSYPMGMGYTSNPFQDIEIPMYAGMHYQFPQTPLVMEDFPQVNLMETTKSMKPEIMTDDCMIYDRYRDCLNGTLEEIISLCSSQDHSVANFPMLE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi712g00012 349 SUPERFAMILY NAC domain 3 149 IPR036093 GO:0003677|GO:0006355
Sebi712g00012 349 ProSiteProfiles NAC domain profile. 6 149 IPR003441 GO:0003677|GO:0006355
Sebi712g00012 349 Pfam No apical meristem (NAM) protein 7 125 IPR003441 GO:0003677|GO:0006355
Sebi712g00012 349 Gene3D NAC domain 15 152 IPR036093 GO:0003677|GO:0006355
Sebi712g00012 349 FunFam Nac domain-containing protein 86 15 152 - -
Sebi712g00012 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi712g00012 Sebi-Chr712 305109 308366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi712g00012 1 346 NAC Transcription Factor Family AT1G54330 48.451 5.00e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi712g00012 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi712g00012 - - gmx:100808325 587.03