Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi710g00041 ATGACCGCCATCACCGAGATTATAAGGATGGAGGTTTTAAAGGAAGGGGTAAATATGACAGTTATAATCGTCGTCACAGCCGTGATTATGATAGGCATAATGACAATGTTCGAGATGGGGATACGAGGCACAAACACGGAGCATATTCTAAGAGATCCCGGAGAGAATCTAGATCACGATCCAGATCCCCTTCTCGTTCAGAATGCTGTATTTTTTCATTTATCTTCCAGTCCATCTAATTTTGTGTGCGGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTGCGGGTGTAACACCTGCTGTTTCAGGGCAAATGCTCGGTATTACTCATATGATTCAAGGAACTGCACAAAATTTGTCACCATTTGGGATATCGCAGATTGGATCACTTTCCTTAATGCAAGTTCAACCTATGACACAACAGGCTACAAGGCACGCACGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTGATTAACGAGCAGGCAATTGCAGCATTCTTCAGCCATGTCATGACTGCTATTGGGGGAAATTCTGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAATATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACAGACTATAACCCTTCATTAGCTGCAGCTCTAGGTCCTTGCCAGCCAAGTCCATACCTTAACTTATCTGCTGTTGGACTATCTGTAGGTGCAGTTGGTGGGACTGATGGACTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCACAGATGAGAGAATTGCTCCAATCTTTTGGTCCTCTCCGGTCTTTTGATATAGTTAGGGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTGACAGACATTGCCTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGACGTGCGGCTGTCAGTGGACATTCTAAAACAGAGCAGGAACACATCTTTGCACAGGCCCAACAGCATATAACTATGCAGAAAATAGCTTTGGAAGTGGGTGGGTTAAATATTCCAGGAGTGGAAAGAGTCCAAACAACAAATGAAGAAATCCCCACTAAAGTTTTATGTTTGACTGAGGCCATTACAACTGATCAATTGTTGGATAATGAGGAGTATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGCCCTAATCACAGTGGAGAGCTGCCTCCAGGTATTGGAAAGGTGTTCTTGGAATACGCTGATAGCTCTGGTTGTTTCGCTGCGAAAAATGCGCTAAATGGTAGGAAGTTTGGGGGCAATATTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCATAGTAGGGAGTTTGATGTATAA 1494 0.4337 MTAITEIIRMEVLKEGVNMTVIIVVTAVIMIGIMTMFEMGIRGTNTEHILRDPGENLDHDPDPLLVQNAVFFHLSSSPSNFVCGKRTSGFDMAPPAAGVTPAVSGQMLGITHMIQGTAQNLSPFGISQIGSLSLMQVQPMTQQATRHARRVYVGGLPPLINEQAIAAFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPCQPSPYLNLSAVGLSVGAVGGTDGLDRIFVGGLPYYFTEAQMRELLQSFGPLRSFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRAAVSGHSKTEQEHIFAQAQQHITMQKIALEVGGLNIPGVERVQTTNEEIPTKVLCLTEAITTDQLLDNEEYEEILEDMRDECCKFGTLMNVVIPRPNHSGELPPGIGKVFLEYADSSGCFAAKNALNGRKFGGNIVTAVYYPEEKYHSREFDV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi710g00041 497 SUPERFAMILY RNA-binding domain, RBD 270 489 IPR035979 GO:0003676
Sebi710g00041 497 FunFam U2 snRNP auxiliary factor large subunit 144 245 - -
Sebi710g00041 497 SMART rrm1_1 150 228 IPR000504 GO:0003723
Sebi710g00041 497 SMART rrm1_1 397 483 IPR000504 GO:0003723
Sebi710g00041 497 SMART rrm1_1 270 343 IPR000504 GO:0003723
Sebi710g00041 497 FunFam U2 snRNP auxiliary factor large subunit 246 358 - -
Sebi710g00041 497 Gene3D - 392 496 IPR012677 -
Sebi710g00041 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 232 IPR000504 GO:0003723
Sebi710g00041 497 Gene3D - 144 242 IPR012677 -
Sebi710g00041 497 CDD RRM2_U2AF65 269 345 - -
Sebi710g00041 497 CDD RRM3_U2AF65 395 483 - -
Sebi710g00041 497 CDD RRM1_U2AF65 148 230 - -
Sebi710g00041 497 FunFam U2 snRNP auxiliary factor large subunit 392 496 - -
Sebi710g00041 497 Gene3D - 263 365 IPR012677 -
Sebi710g00041 497 PANTHER RNA-BINDING PROTEIN 85 496 - -
Sebi710g00041 497 SUPERFAMILY RNA-binding domain, RBD 149 234 IPR035979 GO:0003676
Sebi710g00041 497 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 76 495 IPR006529 GO:0003723|GO:0005634|GO:0006397
Sebi710g00041 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 347 IPR000504 GO:0003723
Sebi710g00041 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 340 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi710g00041 Sebi-Chr710 459531 466537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi710g00041 263 476 Eukaryotic Initiation Factors Gene Family AT1G71770 23.288 1.06e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi710g00041 K12837 - qsa:O6P43_031823 644.039