Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi710g00027 ATGGCATTTCAGAATTACTTTCCTCAGGAATTGAAAACCATTCCAAATGCTGTGACAGACACAGAAAATTGCAATGGTTGTTTCGATTGCAACATCTGCTTAGACACTGCAAATGAACCAGTAGTCACCCTCTGTGGCCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTTGCACCTGATGAGCATCCACAATGCCCTGTTTGCAAGGTTGATATATCCCATAGTTCAATGGTCCCGCTGTATGGCCGGGGCCAGAGCCAGACCCAACCTGGTGGGAAAGCATCTTGTTGTGATATTTTTATACCACCAAGACCACCTGCTACAGGTGCTCAAGCTCTTTTGGCACCATCATCTCAAAGTGGTCAACAGCTTCAATATCGTAATCCTTATCAGGGTCAATATTTCAGTCCTCCTCTATACCAAGAAGAGGATGGCACTTCACAAATGCTCAATCTTGGTGCCTCCATGACTCCAACATCTCACCATCCTGTGGTTGGGATGTTTGGAGAGATGGTTTTTGCTCGAGTGTTTGGCAGCCCACATAATTTGTATGCCTACCCAAATTCTTATCAGCTGATGGCAATTGAGATTATACTTTGTAAAGAAGCATGGATGCATGCTTTAAGAACTTGGCAGATCGAGTGA 669 0.4499 MAFQNYFPQELKTIPNAVTDTENCNGCFDCNICLDTANEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKVDISHSSMVPLYGRGQSQTQPGGKASCCDIFIPPRPPATGAQALLAPSSQSGQQLQYRNPYQGQYFSPPLYQEEDGTSQMLNLGASMTPTSHHPVVGMFGEMVFARVFGSPHNLYAYPNSYQLMAIEIILCKEAWMHALRTWQIE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi710g00027 222 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 129 - -
Sebi710g00027 222 SMART ring_2 30 76 IPR001841 -
Sebi710g00027 222 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Sebi710g00027 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 99 IPR013083 -
Sebi710g00027 222 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Sebi710g00027 222 SUPERFAMILY RING/U-box 26 89 - -
Sebi710g00027 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 188 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sebi710g00027 222 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi710g00027 Sebi-Chr710 358801 359584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi710g00027 10 201 C3H Transcription Factor Family AT4G27470 42.211 2.25e-46 152