Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi70g00088 ATGGCTTCAAATTCTGATTCGGATTCCTCAACACCACCTCCTCCACCCGATTCATCTTCATCAGAATCCCCGCCACCACCCGATTCATCGCCGCCTCCACCACCCAACGATAATTCATCTCCGCCACCACCATCCTCTCCTCCTCCTCCATCATCCCCTCCTCCGCCATCCCCTCCACCGCCATCAGACGATGATAACAAATCTCCACCTCCGCCATCTGGCTCTTCCCCATCTCCACCACCACCTTCTGACAAGGACAAGCACTCGCCTCCGCCTCCACCTCCGCCTCCGCCCCCACCCCATTCGAGCCATGAACAGTTTTCTCCGCCTCCGCCACCACATCATCATCGATTGTCTCCACCAGGGTCATCAGAATCCGATACGCAAGAGGATAGTGGGGGTGGGAACCAATTGAGCGTTGCATCTATAATAGGAGTCGCAGCTGGAGCTGGGTTATTGCTCCTTGTCGTTGTCCTACTCGTCATTGCCTGTACTAGAAGGAAAAGAAGATCGGAAGCTCCCATGCATTACTTCAATCAACAAGGAGATAATGACTATTATAAACGTCCAACTGGAGCTCCAAATCAGTATGGGTACAATAATGGTGAGCATGTTCTTAATATTCCTCCACCACCAGGTGCAGGTTGGGGACCTCCTCCACCAGCACCACCCCAACGGTTATCAGCTGCCACTGGTGGGTTTTCCCAACGTAACCTACTAGGTCAAGGTGGGTTCGGGTATGTACACAAAGGTGTTCTACCTAATGGCAAGGAAATAGCAGTGAAGAGCCTTAAATCTACCGGGGGCCAAGGAGATAGAGAATTCCAAGCAGAGGTTGATATTATTAGCCGTGTCCACCATCGCTATCTTGTGTCGCTTGTTGGGTATTCCCTTACGGAAAGTAGAAAGTTGTTGGTATATGAGTTTGTTCCTAACAAGACCCTTGATTACCACCTTCATGGAAAAGGTAGACCTGTCATGGATTGGGGCACTAGGCTCAAAATTGCAATTGGATCAGCCAAAGGACTTGCTTACTTACATGAGGATTGTCACCCTCGTATCATTCATCGAGACATAAAGGGTGCAAACATTCTACTTGAAAACAACTTTGAAGCCAAGGTGTCAGATTTTGGATTGGCAAAGTTTAGCCAAGACACGAACACTCATGTTTCTACTCGTGTGATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACAGAGAAATCTGATGTCTTTTCATACGGTATTATGCTTTTGGAGCTCATAACAGGTCGACGCCCAGTGGACAACACTGGTGATTATGAAGAGGATAGCTTGGTTGATTGGGCTAAACCACTTTGTATAAAAGCTATGGAAAATGGTATATTTGATGGATTAGTGGATCCACGTTTAGAGGACAATTATGACAAACAGGAGATGACACGTATGGTGGCTTGTGCTGCTGCTAGCGTTAGGCACTCTGCAAGAAGGCGCCCAAGAATGAGCCAGATTGTACGAGTACTAGAGGGAGATGCCTCATTAGACGTCCTTAATCATGATGGAGTTAAGCCTGGGCAGAGTGCAATGTTTAGCAGCGCAAGTGGCGAATATGATGCTGGGGCATATAGTGCTGACATGAAAAAGTTCAGGAAACTAGCATTTGATAGCGGCAATGCAAGCAGTGAGTTTGGTGAAACAAGTGAGTATGGCCTCAATCCTTCCATCTCAAGCAGTGAACAATCATCTACTGAATATGGCAGGAGGACAGGAACTCGGATGCACACTCCTTGA 1788 0.4782 MASNSDSDSSTPPPPPDSSSSESPPPPDSSPPPPPNDNSSPPPPSSPPPPSSPPPPSPPPPSDDDNKSPPPPSGSSPSPPPPSDKDKHSPPPPPPPPPPPHSSHEQFSPPPPPHHHRLSPPGSSESDTQEDSGGGNQLSVASIIGVAAGAGLLLLVVVLLVIACTRRKRRSEAPMHYFNQQGDNDYYKRPTGAPNQYGYNNGEHVLNIPPPPGAGWGPPPPAPPQRLSAATGGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVDIISRVHHRYLVSLVGYSLTESRKLLVYEFVPNKTLDYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVSDFGLAKFSQDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGIMLLELITGRRPVDNTGDYEEDSLVDWAKPLCIKAMENGIFDGLVDPRLEDNYDKQEMTRMVACAAASVRHSARRRPRMSQIVRVLEGDASLDVLNHDGVKPGQSAMFSSASGEYDAGAYSADMKKFRKLAFDSGNASSEFGETSEYGLNPSISSSEQSSTEYGRRTGTRMHTP 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi70g00088 595 ProSitePatterns Protein kinases ATP-binding region signature. 240 262 IPR017441 GO:0005524
Sebi70g00088 595 MobiDBLite consensus disorder prediction 558 595 - -
Sebi70g00088 595 Pfam Protein tyrosine and serine/threonine kinase 237 449 IPR001245 GO:0004672|GO:0006468
Sebi70g00088 595 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 149 557 IPR047117 -
Sebi70g00088 595 PRINTS Proline rich extensin signature 31 48 - -
Sebi70g00088 595 PRINTS Proline rich extensin signature 9 25 - -
Sebi70g00088 595 PRINTS Proline rich extensin signature 49 74 - -
Sebi70g00088 595 SMART serkin_6 234 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi70g00088 595 MobiDBLite consensus disorder prediction 9 118 - -
Sebi70g00088 595 Gene3D Transferase(Phosphotransferase) domain 1 310 518 - -
Sebi70g00088 595 MobiDBLite consensus disorder prediction 557 595 - -
Sebi70g00088 595 SUPERFAMILY Protein kinase-like (PK-like) 217 507 IPR011009 -
Sebi70g00088 595 FunFam Proline-rich receptor-like protein kinase PERK1 310 518 - -
Sebi70g00088 595 MobiDBLite consensus disorder prediction 1 135 - -
Sebi70g00088 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Sebi70g00088 595 Gene3D Phosphorylase Kinase; domain 1 221 309 - -
Sebi70g00088 595 ProSiteProfiles Protein kinase domain profile. 234 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi70g00088 595 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 224 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi70g00088 Sebi-Chr70 2124710 2127900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi70g00088 131 586 Trihelix Transcription Factor Family AT1G70460 49.689 1.12e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Sebi70g00088 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi70g00088 - - gmx:100806299 690.649