Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi70g00040 ATGGGAAACTGTTTCGGAAAGCCAGATGATGACAACAAGAAGAAGATTCACAGTAAGCAGACTACTACTTCTCCTGCAGAAAGAAGCAATGAGAAGGAAAGGGTTTCAGATGGAGAAAAGAGTAGAGGGAAGATCGTTACGCCGAATCTGAAAATGTTCACATTGGATGAGTTGAAAAGTGCCACAAGAAACTTCAGACCAGACACAGTGGTTGGGGAGGGTGGTTTTGGGCGTGTTTTCAAAGGATGGATTGACCCTAACACCTTCAAGCCTTCCAGAGTTGGCGTTGGAATCCCCGTTGCCGTCAAGAAGTCCAACCCTGATAGCCTCCAAGGTCTACAAGAATGGCAGAGTGAAGTGAAGTTTTTGGGGAAGTTCTCTCATCCAAACCTGGTTAAACTACTTGGCTTCTGCTGGGAGGAAAATCAATTCCTGCTTGTCTATGAATACATGCAAAAGGGCAGCTTGGAAACCCACCTCTTCAGAAGAGGCCCTGAACCACTTTCGTGGGATATAAGGCTCAAGATAGCCATAGGAGCTGCCAGAGGTCTCGCTTTCTTGCATACATCAGAAAAATCTGTCATCTATAGAGACTTCAAATCCTCCAACATTTTGCTTGACCAGAATTTTAATGCAAAGCTGTCAGACTTTGGGTTGGCAAAGTTGGGCCCAGTCAACGGTAGATCCCACATAACCACGCGGGTCATGGGCACCTATGGTTATGCTGCCCCTGAGTACATGGCCACAGGTCATCTCTATGTGAAAAGCGACGTATATGGATTTGGTGTTGTTCTGCTAGAATTGTTAACAGGCTTAGCAGCACTGGACACAAACCGGCCAACGGTTGAGCAGAATTTGGTGGAATATAGTAAGCCATATCTAAGTGACAAAAAGAAACTAAAAAGGATAATGGACCCAAGGATGGACGAACAACCGTCTATGGAGGAGGTTTTGGGAATCTTAGAGAAGGCCCAAAACATCAAATATAAGCCCAAAGCGAAGAAAGCCAGTGCAGTGCATCAAAGAAAGAGATCACCAGAGGAGCATCCCACAGAAAATCAACTTCGCTCTCCTATTCATCACAACAACAATGGTTACTCCAAATCAAGAACTCATTCCCCCCAATAG 1128 0.4521 MGNCFGKPDDDNKKKIHSKQTTTSPAERSNEKERVSDGEKSRGKIVTPNLKMFTLDELKSATRNFRPDTVVGEGGFGRVFKGWIDPNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLLGFCWEENQFLLVYEYMQKGSLETHLFRRGPEPLSWDIRLKIAIGAARGLAFLHTSEKSVIYRDFKSSNILLDQNFNAKLSDFGLAKLGPVNGRSHITTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLELLTGLAALDTNRPTVEQNLVEYSKPYLSDKKKLKRIMDPRMDEQPSMEEVLGILEKAQNIKYKPKAKKASAVHQRKRSPEEHPTENQLRSPIHHNNNGYSKSRTHSPQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi70g00040 375 Gene3D Phosphorylase Kinase; domain 1 35 150 - -
Sebi70g00040 375 Pfam Protein tyrosine and serine/threonine kinase 69 275 IPR001245 GO:0004672|GO:0006468
Sebi70g00040 375 SUPERFAMILY Protein kinase-like (PK-like) 50 341 IPR011009 -
Sebi70g00040 375 FunFam Os07g0541700 protein 151 238 - -
Sebi70g00040 375 Gene3D Transferase(Phosphotransferase) domain 1 151 348 - -
Sebi70g00040 375 MobiDBLite consensus disorder prediction 329 375 - -
Sebi70g00040 375 FunFam Serine/threonine-protein kinase BIK1 31 150 - -
Sebi70g00040 375 MobiDBLite consensus disorder prediction 340 355 - -
Sebi70g00040 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Sebi70g00040 375 PANTHER OS01G0588500 PROTEIN-RELATED 24 332 - -
Sebi70g00040 375 ProSitePatterns Protein kinases ATP-binding region signature. 71 104 IPR017441 GO:0005524
Sebi70g00040 375 MobiDBLite consensus disorder prediction 1 42 - -
Sebi70g00040 375 MobiDBLite consensus disorder prediction 356 375 - -
Sebi70g00040 375 MobiDBLite consensus disorder prediction 7 41 - -
Sebi70g00040 375 ProSiteProfiles Protein kinase domain profile. 65 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi70g00040 Sebi-Chr70 885365 888043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi70g00040 30 309 Glycoside Hydrolase AT3G07070 49.825 4.75e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi70g00040 PK_Tyr_Ser-Thr 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi70g00040 - - aprc:113865973 567