Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi70g00037 ATGGGAGATGGTGCTGTGCCATCATCTGCAACCATGATGGAAGCTCCACCTGATGGAACCTCAATGGATTTTGATTACATGAGTGAACTTTTCTTAGATGGTTGTTGGTTGGAAGCCTCTGCTGATGGATCTGATTTCTTGCTGCAAAGTCCTCCTTTTTCCAATCCCCTCTTTGACCCTTCATTCTCTTGGCCTGCCTTAGAGACCAATGAGCCACCACAAGATGGGAATCAAAATGAATCCCAAGAAGCTCCTTTTGGCACCCAACCAGAAAGCCATGAAATGGTTAATGTTGCTGGTAGTTGTAATCAGCAGTATCAGTCTGAAACTGAAGGTGCATCTGAAATGGTCAGAAGGTGGTGGATTGCACCTACCCCTAATCCAGGACCTGGATTTTCCATAATGGAGAAGCTGATAAGGGCACTCAAGTGGATCAGAGATTTCAATAGCAACAAAGATATGCTTATACAAATATGGGTGCCAACAGTTCATAGTGGGGATAATAGGCCAATTCTAACAGCTAATGATCTTCCCTTTTCACTTGAAACCAGGTCTGGAAACCTTGCAAAGTACAGAGAAATCTCTGTGAGATATCAGTTTTCAGCAGAGGAGGATTCCAAGGAGATGGTGGCAGGATTGCCTGGTAGAGTTTTCAGGGACAAGGTTCCTGAGTGGACTCCTGATGTTCGATTCTTTAGGAGTGAAGAGTACCCTCGAGTTGACCATGCTAAAAGGAATGATATCTGTGGAACCTTAGCAGTTCCAATCTTTGAACAAGGTAGCAGGACATGCTTAGGTGTTATTGAGGTTGTGATGACAACTCAGCATATCAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCGCTTGAGGTTGTTGATCTCAGAAGCTCGAAGCATTCAAGTATTAAGAATGTGAAGGCAAGCAACCAGTCCTATGAAGCTGCACTACCCGAGATTCAAGAGGTGCTGAGATCAGCATGTGAAATGCACAAATTACCTTTGGCTCAAACTTGGGTCTCATGCATCCAACAAGGCAAAGATGGGTGCAGACACAATGAAGATAACTATTTACACTGTATATCTCCTGTGGAGCAAGCTTGCTATGTTGGTGATCAATCTGTCAGGTTTTTTCATGAGGCTTGCATTGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCTGGGGGAGCTTTTATGACAAATCAACCATGCTTCTCAACTGATATTACTTCCTTAAGCAAAACAGACTATCCACTATCTCATCATGCGAGGTTGTTTGGATTGAGGGCTGCAGTTGCCATACGCCTCAGAAGTATCTATAGTAATACAGATGACTATGTTCTCGAGTTCTTCTTGCCTGTAGATTGCATTGACAGTGAAGAACAGAAAAAGATGCTTACATCATTGTCCATGATCATACAAAGGGTTTGCCACAGCTTGCGGGTTATAAGAGACAAGGAGTTGGAGGAAACTGACTTATCCACTGATGAAGTAATAGCCCTTGCAGATAGTGGATTTACTAGGACTGCAATTTGTTCAGAACTCCAAAACAGAATGATGGTTCCCTCATTGGGTACTGAAGAAAACTCAAGTAGAACAATGAGTAGAAAATTCTCTGATCTAAGGCAGCAACAAGAAAATATTATTTTAAAAGGAAACCTTGACTGTGGTAGGGAGTCTTCTACCTTTGTTGAGGGTAACTTGTCAAGTGTGGGAATAAGTAAAACGGGAGAGAAAAGACGGGCCAAAGCAGATAAAACTATCACTCTGCAAGTTCTTAGGCAATATTTTGCTGGAAGCCTTAAAGATGCTGCTAAGAATATCGGTGGTAAGCTTTGTACAAGAGCATGTTTCCATGTTATGTTTTTGTATGCAAACACTAAGGCACGTGAATGGAATGGAACTAAAAGGATCTGCCGGCAACATGGTATAAAGCGTTGGCCTTCTCGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGGTGCCTCTGGTGCATTTCAAATCGATTCCTTCTACTCAAAATTCCCGGACCTAGCTTCTCCAAACATATCAGGAACCAGCTTGGTCTCAGCTTTGAATCAAAGTGATAATCCAAACTCATTAAGCATACAGCCAGATCCTGGCTCATTGAGTCCAGAAGGTGCATCAAAATCACCCTCTTCCTCATGCAGTCAGAGTTCCTTCTCAAGCCATTCCTGTTCCAGCATGTCAGAGCAACAACCTCACACAAGTAATGTTGCTGGTAACAAAGATTCTACAATTGGTGAAGATTCTGTTGATGTTGTGTTGAAGAGGATAAGAAGTGAAGCAGAGCTTAAAAGCCTTATTCAAGACAGAACAAAGCTCTTGCCAAGATCCCTAAGCCAGGAAACACTTGGAGAACACCCTAAAACAAATTATCACAGGCCATTTATGAAAACCAGTGGCAAGGAGGATGCTCACAGGGTAAAAGTAACATATGGAGATGAGAAAAGCCGGTTTCGGATGCCAAAGAATTGGGGTTATGAAGATCTTTTGCAAGAAATTGGTAGGAGATTCAGTGTCAGTGACATGAGCAAATTTGATATCAAATATTTGGATGATGATTGTGAGTGGGTGTTACTAACCTGTGATGCTGATTTAGAAGAATGCATTGATGTTTGTCAATCTTCTGAGAGTAGTACCATCAAACTTTGCCTCCAAGCTTCTAGACATTGTATGGGAAGTTCTTTTTAG 2745 0.4208 MGDGAVPSSATMMEAPPDGTSMDFDYMSELFLDGCWLEASADGSDFLLQSPPFSNPLFDPSFSWPALETNEPPQDGNQNESQEAPFGTQPESHEMVNVAGSCNQQYQSETEGASEMVRRWWIAPTPNPGPGFSIMEKLIRALKWIRDFNSNKDMLIQIWVPTVHSGDNRPILTANDLPFSLETRSGNLAKYREISVRYQFSAEEDSKEMVAGLPGRVFRDKVPEWTPDVRFFRSEEYPRVDHAKRNDICGTLAVPIFEQGSRTCLGVIEVVMTTQHINYGPELESVCKALEVVDLRSSKHSSIKNVKASNQSYEAALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHNEDNYLHCISPVEQACYVGDQSVRFFHEACIEHHLLKGQGVAGGAFMTNQPCFSTDITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSNTDDYVLEFFLPVDCIDSEEQKKMLTSLSMIIQRVCHSLRVIRDKELEETDLSTDEVIALADSGFTRTAICSELQNRMMVPSLGTEENSSRTMSRKFSDLRQQQENIILKGNLDCGRESSTFVEGNLSSVGISKTGEKRRAKADKTITLQVLRQYFAGSLKDAAKNIGGKLCTRACFHVMFLYANTKAREWNGTKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLASPNISGTSLVSALNQSDNPNSLSIQPDPGSLSPEGASKSPSSSCSQSSFSSHSCSSMSEQQPHTSNVAGNKDSTIGEDSVDVVLKRIRSEAELKSLIQDRTKLLPRSLSQETLGEHPKTNYHRPFMKTSGKEDAHRVKVTYGDEKSRFRMPKNWGYEDLLQEIGRRFSVSDMSKFDIKYLDDDCEWVLLTCDADLEECIDVCQSSESSTIKLCLQASRHCMGSSF 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi70g00037 914 SUPERFAMILY CAD & PB1 domains 815 908 - -
Sebi70g00037 914 CDD PB1_NLP 824 905 IPR034891 -
Sebi70g00037 914 MobiDBLite consensus disorder prediction 705 763 - -
Sebi70g00037 914 Pfam PB1 domain 824 904 IPR000270 GO:0005515
Sebi70g00037 914 Gene3D - 824 905 - -
Sebi70g00037 914 Pfam RWP-RK domain 587 655 IPR003035 -
Sebi70g00037 914 MobiDBLite consensus disorder prediction 59 88 - -
Sebi70g00037 914 MobiDBLite consensus disorder prediction 67 88 - -
Sebi70g00037 914 ProSiteProfiles RWP-RK domain profile. 574 675 IPR003035 -
Sebi70g00037 914 MobiDBLite consensus disorder prediction 705 762 - -
Sebi70g00037 914 PANTHER PROTEIN NLP8 69 913 IPR045012 GO:0003700
Sebi70g00037 914 ProSiteProfiles PB1 domain profile. 823 906 IPR000270 GO:0005515
Sebi70g00037 914 SMART PB1_new 823 906 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi70g00037 Sebi-Chr70 779811 783732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi70g00037 22 908 NLP Transcription Factor Family AT1G20640 48.337 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi70g00037 PB1 1.4e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi70g00037 - - gmx:100785135 1325.84