Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi70g00001 ATGACTCACAAATCGGAAGCCGTGGTTTACCTTCACGGAAACCTCGATTTGAAAATCCTGGAGGCTCGTTTTCTCCCAAACATGGACATGCTTTCAGAGCGCGTCCGTAGATTCTTCTCCGCTCTCAACTCTTGCAGTTCTTCCATCTCCGGCAATAGCAAGCATCGTCATCCACGTCACCATCACCGCAAGATCATCACCAGCGATCCATACGTCACCGTTTGCCTCGCCGGTGCCACGGTTGCACGCACTCGCGTAATCCCAAATTCGCAGAATCCTACATGGAACGAGCGTTTCAAGATCCCTCTGGCTCATCCTGTGAGACAGGTTGAGTTCTACGTGAAGGACAATGACATGTTCGGTGCCGACTTGATCGGAATCGCAACCGTCTCCGCCGCGAAGATCTTATCAGGTGAATTAATTTGCGATTGGTTTCCGGTTATAGGTTCGTTCGGGAAGCCTCCCAAACCTGATTGCGCCGTTCGGCTCGAGATGAAGTTCACGAGGTGCGAGGATAGTACTCTGTACGGCTCTGGAGTTGAACCGGGTCCGGATCGGTTCGTGGTTCGGGATTCGTATTTTCCGGTTCGGCAGGGAGGATCGGTGACGCTGTATCAGGACGCGCATGTTCCTGAGTCGATGTTACCGGAGATTGAATTGGAGGATGGGGTTACGTTTCAGCAAGGGACTTGCTGGGAAGATATCTGTCACGCAATTTTGGAAGCGCATCATTTGGTTTACATTGTGGGTTGGTCCATTTACCACAAGGTGAGGCTGGTTAGAGAGCCCACCAAGCCTTTACCTAGCGGTGGGAATTTGAATTTGGGGGAGTTGCTCAAGTACAAGTCACAAGAAGGTTTGCGAGTTTTATTATTGGTTTGGGATGATAAGACTTCGCACAGCAAATTTTTCATTAACACGACTGGAATAATGCAAACTCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTTCATGTGTGCTCTCACCTCGATATGCCAGCAGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCTGAGCACAGAATTTGCCGTGATCTTGACACTGTTTATGAGGATGATTATCATAATCCCACATTTTCTGCAGGAACCAAAGGTCCAAGGCAAGCATGGCACGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCTACCAAATGGTCTGAGTTGGGTAAAAAATTCAAAAGAGTATCTCATTGGCATGATGATTCTTTGATTAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAGTTCCATATGATGATCCTGAATTATGGGTTTCAAAGGAAGATGACCCTCAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCGAAGGAAGTATTTGAAGCTGAGGCTCAGAACCTTGTTTGTGCGAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCGTACATACATGCTATCAGATCTGCACAACATTTTATTTATATCGAGAATCAATATTTCCTTGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTGCTGATAACTTAATTCCTATAGAGTTAGCACTGAAGATAGTCAGTAAGATAAGATCCAAGGAAAGATTTACAGTTTACGTTGTCATCCCAATGTGGCCTGAAGGTGCCCCTTCTTCTGCCTCTGTGCAAGAGATTCTCTTTTGGCAGGGACAAACTATGCAAATGATGTATGAAATCATAGGTCGGGAGCTAAAATCTATGCATCTTGACAATAGCCATCCACAGGATTACCTCAATTTCTACTGTCTTGGGAACCGAGAGAAGTTGACAACTGAAGTTTCAAGTTCAAATAATTCACCTTCAGATAATTGCGAGACGGTTTCAGCGTCACAAAAGTACCGACGGTTTATGATTTATGTACATGCCAAGGGAATGGTTGTTGATGATGAATATGTGATACTTGGGTCTGCCAATATCAATCAACGATCTATGGCTGGATCAAGAGATACTGAGATAGCAATGGGTGCATATCAACCCCATCATACATGGAGTCAGAAAAGGGGACATCCCCATGGTCAGGTATATGGGTATAGAATGTCCTTATGGGCAGAACACATGGGGTGTGTGAATGGCTGCTTCAAGGAACCTGAAAATTTGGATTGCGTGAAGTATGTGAACAAGATTGCTGAAGACAACTGGAAAAAAGTACACAGCTGA 2274 0.445 MTHKSEAVVYLHGNLDLKILEARFLPNMDMLSERVRRFFSALNSCSSSISGNSKHRHPRHHHRKIITSDPYVTVCLAGATVARTRVIPNSQNPTWNERFKIPLAHPVRQVEFYVKDNDMFGADLIGIATVSAAKILSGELICDWFPVIGSFGKPPKPDCAVRLEMKFTRCEDSTLYGSGVEPGPDRFVVRDSYFPVRQGGSVTLYQDAHVPESMLPEIELEDGVTFQQGTCWEDICHAILEAHHLVYIVGWSIYHKVRLVREPTKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTTGIMQTHDEETRKFFKHSSVSCVLSPRYASSGLDLCDGRYDTPEHRICRDLDTVYEDDYHNPTFSAGTKGPRQAWHDLHCKIEGPAAYDILTNFEQRWRKATKWSELGKKFKRVSHWHDDSLIKLERISWILSPSESVPYDDPELWVSKEDDPQNWHVQVFRSIDSGSLKGFPKEVFEAEAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPIELALKIVSKIRSKERFTVYVVIPMWPEGAPSSASVQEILFWQGQTMQMMYEIIGRELKSMHLDNSHPQDYLNFYCLGNREKLTTEVSSSNNSPSDNCETVSASQKYRRFMIYVHAKGMVVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPHHTWSQKRGHPHGQVYGYRMSLWAEHMGCVNGCFKEPENLDCVKYVNKIAEDNWKKVHS 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi70g00001 757 Gene3D C2 domain 11 175 IPR035892 -
Sebi70g00001 757 SUPERFAMILY Phospholipase D/nuclease 190 415 - -
Sebi70g00001 757 PIRSF PLD_plant 337 757 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Sebi70g00001 757 PIRSF PLD_plant 1 339 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Sebi70g00001 757 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Sebi70g00001 757 SMART pld_4 655 682 IPR001736 GO:0003824
Sebi70g00001 757 Gene3D Endonuclease Chain A 336 429 - -
Sebi70g00001 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 655 682 IPR001736 GO:0003824
Sebi70g00001 757 Pfam PLD-like domain 508 691 IPR025202 -
Sebi70g00001 757 FunFam Phospholipase D 470 701 - -
Sebi70g00001 757 Pfam C2 domain 13 147 IPR000008 -
Sebi70g00001 757 CDD C2_plant_PLD 7 168 - -
Sebi70g00001 757 Gene3D Endonuclease Chain A 478 705 - -
Sebi70g00001 757 SUPERFAMILY Phospholipase D/nuclease 453 726 - -
Sebi70g00001 757 PANTHER PHOSPHOLIPASE D 4 754 IPR015679 -
Sebi70g00001 757 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 167 IPR035892 -
Sebi70g00001 757 SMART C2_3c 14 144 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi70g00001 Sebi-Chr70 13235 18611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi70g00001 5 638 Phospholipase D Gene Family (Wang group) AT4G35790 60.926 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi70g00001 K01115 - gmx:100795859 1351.27