Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi707g00030 ATGAACTTGGTATCTATTCTTTTGCTATTGGCTAGCGTTTGTTGTTTTGCGCTTCCTGAGCTTGATTTACAAGGATACTTGACGCCAAGAATAGGAGCTCTAAAAAGCCTTACAACTCTTTCCTTGCAAGGGAACAACATCACCGGTGACATACCAAAAGAAATAGGAAATCTTACAAGCTTGGTCAGATTGGATCTGGAGAATAACAGATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTGACACTGAGTCAAAACAATCTCAATGGGACAATCCCAGAATCACTTGCCAATCTCCCGAGCTTGATCAATGTCCTGCTAGATTCTAATGATCTTAGTGGAAAGATTCCAGAGCAGTTATTCAACGTTCTCAAGTACAATTTCTCTGGTAATAAGTTGAATTGCGGCGTGAATTATCATAATCTTTGCATATCTGATAATGCAGATCAAGGTTCATCACACAAACCAAAAGTAGGCCTCATAGTTGGATTAGTTATAGGTTTAGCTGTTATCCTTTTTCTTGGCGGCCTGCTGTTTTTCTGGTGCAAGGGGTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAATTGATCGGCGAATTACATTTGGTCAAATAAAAAGGTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTCTATAAAGGTGTTCTAGTTGATGGCACAAAAGTTGCTGTCAAAAGGTTAACTGATTTTGAAAGTCCTGGGGGTGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTCATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTGGTTTATCCCTTCATGCAGAACTTGAGTGTTGCCCATCGTTTACGAGATGAAGATGATGTGTTACTGCTTGACCATGTTAAGAAACTACAACGGGAGAAAAAACTGGATACTATTGTTGACAGCAACCTTAACAAAAATTACAACATAGAAGAGGTTGAAATGATTGTACAAGTTGCATTACTTTGCACACAAGCATCGCCAGAGGACCGTCCCGTAATGTCAGAGGTTGTAAGAATGCTAGAGGGAGAAGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTGACTCGGAGGCAAGACTATGAGAGACTACAAAGGAGATTGGAGTTTGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAGTTGTCTGGTGGAAGATGA 1290 0.4109 MNLVSILLLLASVCCFALPELDLQGYLTPRIGALKSLTTLSLQGNNITGDIPKEIGNLTSLVRLDLENNRLTGEIPSSLGNLKKLQFLTLSQNNLNGTIPESLANLPSLINVLLDSNDLSGKIPEQLFNVLKYNFSGNKLNCGVNYHNLCISDNADQGSSHKPKVGLIVGLVIGLAVILFLGGLLFFWCKGYKREVFVDVAGEIDRRITFGQIKRFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLVDGTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAHRLRDEDDVLLLDHVKKLQREKKLDTIVDSNLNKNYNIEEVEMIVQVALLCTQASPEDRPVMSEVVRMLEGEGLAERWEEWQHVEVTRRQDYERLQRRLEFGEDSVYNQDAIELSGGR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi707g00030 429 Pfam Protein tyrosine and serine/threonine kinase 231 329 IPR001245 GO:0004672|GO:0006468
Sebi707g00030 429 FunFam Protein NSP-INTERACTING KINASE 2 314 400 - -
Sebi707g00030 429 SUPERFAMILY Protein kinase-like (PK-like) 213 327 IPR011009 -
Sebi707g00030 429 Gene3D Ribonuclease Inhibitor 10 151 IPR032675 -
Sebi707g00030 429 SUPERFAMILY L domain-like 15 153 - -
Sebi707g00030 429 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 150 - -
Sebi707g00030 429 FunFam Somatic embryogenesis receptor kinase 1 197 304 - -
Sebi707g00030 429 Gene3D Phosphorylase Kinase; domain 1 197 302 - -
Sebi707g00030 429 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 333 391 - -
Sebi707g00030 429 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Sebi707g00030 429 Pfam Leucine rich repeat 60 119 IPR001611 GO:0005515
Sebi707g00030 429 Gene3D Transferase(Phosphotransferase) domain 1 303 400 - -
Sebi707g00030 429 ProSiteProfiles Protein kinase domain profile. 228 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi707g00030 Sebi-Chr707 420539 427123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi707g00030 313 429 Receptor kinase-like Gene Family AT5G10290 79.487 2.55e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sebi707g00030 PK_Tyr_Ser-Thr 5.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi707g00030 - - gmx:100793416 506.138