Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi705g00014 ATGGAAAGCAAGTTCCAGAACTCAGTTTTGCTTGAATTAGCAGCATGCAATGATTTTGAGGCTTTCAAAAAGGAAGTAGAAGAGAAGGGTTTTGATGTCAATGAGGAAGGAATTTGGTATGGTAGAAGAATTGCATCAAAGAAGATGGGATATGAAAAGAGGACACCCCTCATGGTTGCTTCTTTGTTTGGAAGCACTAGGGTGATGAAGTATATTATTGAGACTGGCAGGGTTGATGTGAACATGGCCGTTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTTGCTGGGGGCTCTGAATCCAACCTTGAGATTGTCAAGCTCTTGCTTGATGCTGGGGCAAATTCTGAGAGCCTTGATGCCAGTGGTAATAAGCCTGTTAGTCTGATTGCTCCTGCTTTTAATACTTTGTCCAAATCACGAAGGAAGGCTATGGAGTTGTTGCTCAGAGGTGGGGAGGGAGATCAAATGATCAACCTAGAGATGGAGGAGCAGAAATTTTCAGTGCCTTCTTTGCTATCAAAAGAAGGAACTGAGAAGAAAGAATATCCTATTGATATATCATTGCCTGACATAAACAATGGTATTTATGGAACAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCTTACACCCATGACTGGACTGAGTGTCCTTTTGTTCATCCGGGGGAGAATGCGAGGAGGAGAGACCCACGGAAGTACCCTTACAGCTGTGTTCCCTGCCCTGAGTTTCGCAAAGGGACTTGCCAGAAGAAAGATGCATGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTACATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAGATTAGCTGTTCTAGGAAAGTTTGCTTCTTTGCTCACAAGCCTGAAGAGTTACGCCCTGTGTATGTTTCCACTGGATCAGCATTGCCTTCACCAAAATCTTCTTCAGCTAGTGCACTTGATTCAAAAGTGACGAGTCCTTTGTCTCTTAGTTCCTCATCTCTGCCAATGTCAACTGTTTCAAGTTCAACACCACTCATGTCTCCCTTGGCAGCTGTTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAATAAAATCAACCCCACTCCACCTTCATTGCAGCTCCCAGGTAGCCAACTGAAAACTACTTTCAATGCAAGGGATTTTGATCTGGAAATGGAACTGCTTGGTCTTCAAAGATCTTCTAATCAACAGCAGCAACAATTGATAGAAGAGATTGCCCGACTCTCTTCTCCGTCTTTCCAGAACAAGGAATTCAATAGGATTGGTGATTTGAAGCCAACTAACCTTGATGACTTGTTAGGATCTGTTGATACTTCTGTATTATCTCAATTACATGGTCTATCAATGCAACCTTCAACACCTACTCAATTGCAATCTCCAAGTAGACTTCAGCTGCACCAAAACATGAACCATCTTCGGGGAAGTTATCCATCCAACATTGCTTCCTCTCCAGTGAGAAAAACCTCAGCATTTGGGTTTGACTCATCAGCTTCTGTGGCTGCAGCTGTGATGAATTCAAGGTCTGCTGCATTTGCAAAACGAAGCCAAAGTTTTATGGATCGTGGCGTGGCAAGACACCACCATCTTGGTGTGTCTTCTTCAGCTTCCAACCCCACCTGTAGGATGACCTCTGGCCTTTCAGATTGGACTTCACCTAATGGGAAACTGGATTGGGGCATGAATGGACACGAGCTGAACAAGTTGAAAAAATCTGCTTCTTTTGGGTTCAGAAACAATGGGGTAACAACTGCCTCCCCCTTGGTAAAGTCAGAAAATGCTGAACCAGATGTCTCATGGGTTCATTCATTTGTTAAAGATGTTTCCTCTGAGAGTTCTGAGATGTATAGTGCTGAGAAGCTGCATCTTGATCTCCGGAAAGAGATGCTTTCACCATGGATGGAACAGCTGTATATGGAACAAGAGCAGATGGTGGCATAA 1977 0.4426 MESKFQNSVLLELAACNDFEAFKKEVEEKGFDVNEEGIWYGRRIASKKMGYEKRTPLMVASLFGSTRVMKYIIETGRVDVNMAVGSDRATALHCAVAGGSESNLEIVKLLLDAGANSESLDASGNKPVSLIAPAFNTLSKSRRKAMELLLRGGEGDQMINLEMEEQKFSVPSLLSKEGTEKKEYPIDISLPDINNGIYGTDEFRMYSFKVKPCSRAYTHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYAHGVFESWLHPAQYRTRLCKDEISCSRKVCFFAHKPEELRPVYVSTGSALPSPKSSSASALDSKVTSPLSLSSSSLPMSTVSSSTPLMSPLAAVSSPKSGSLWQNKINPTPPSLQLPGSQLKTTFNARDFDLEMELLGLQRSSNQQQQQLIEEIARLSSPSFQNKEFNRIGDLKPTNLDDLLGSVDTSVLSQLHGLSMQPSTPTQLQSPSRLQLHQNMNHLRGSYPSNIASSPVRKTSAFGFDSSASVAAAVMNSRSAAFAKRSQSFMDRGVARHHHLGVSSSASNPTCRMTSGLSDWTSPNGKLDWGMNGHELNKLKKSASFGFRNNGVTTASPLVKSENAEPDVSWVHSFVKDVSSESSEMYSAEKLHLDLRKEMLSPWMEQLYMEQEQMVA 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi705g00014 658 SUPERFAMILY Ankyrin repeat 6 133 IPR036770 -
Sebi705g00014 658 ProSiteProfiles Zinc finger C3H1-type profile. 242 269 IPR000571 GO:0046872
Sebi705g00014 658 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Sebi705g00014 658 ProSiteProfiles Ankyrin repeat region circular profile. 87 121 - -
Sebi705g00014 658 SMART ANK_2a 87 119 IPR002110 GO:0005515
Sebi705g00014 658 SMART ANK_2a 52 82 IPR002110 GO:0005515
Sebi705g00014 658 Gene3D - 2 175 IPR036770 -
Sebi705g00014 658 SMART c3hfinal6 277 300 IPR000571 GO:0046872
Sebi705g00014 658 SMART c3hfinal6 242 268 IPR000571 GO:0046872
Sebi705g00014 658 FunFam Zinc finger CCCH domain-containing protein 66 200 268 - -
Sebi705g00014 658 Pfam Ankyrin repeats (3 copies) 13 116 IPR002110 GO:0005515
Sebi705g00014 658 PANTHER UNKEMPT FAMILY MEMBER 12 619 IPR045234 -
Sebi705g00014 658 Gene3D - 243 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi705g00014 Sebi-Chr705 368480 370456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi705g00014 8 653 C2H2 Transcription Factor Family AT5G12850 40.171 2.44e-139 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi705g00014 Ank_2 8.6e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi705g00014 - - gmx:100783376 907.901