Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi705g00012 ATGAGTAAGCTTCAGAGTGATGCTTTGCGAGAAGCTATCTCAGGAATCATGGCTGATTCCAAGGAGAAAAATCGTAAATTTGTGGAGACTATTGAGCTCCAGATTGGGCTGAAGAACTACGATCCACAGAAGGACAAGCGTTTTAGCGGCTCTGTTAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCCCAACACGTTGAAGAGGCAGAGAAAATAGGATTGGACTGGATGGATGTTGAAGCCTTGAAGAAGCTAAACAAAAATAAGAAGTTGGTGAAGAAACTAGCTAAAAAATACCATGCCTTTTTAGCTTCTGAGGCAGTCATCAAGCAGATTCCTCGTCTTTTGGGCCCTGGTCTCAACAAGGCAGGAAAGTTCCCTACACTTGTCACTCACCAAGAATCTCTTGAGTCAAAGGTCAATGAGACTAAGGCTATGGTAAAATTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGCAATGTTAGCATGGAGGAAAAGCAAATCTTTCAAAATGTACAACTCAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAACTGGCAGAATGTGAGTAGTACACTCTCATAA 618 0.432 MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSSTLS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi705g00012 205 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Sebi705g00012 205 FunFam Ribosomal protein L10a 1 119 - -
Sebi705g00012 205 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 191 - -
Sebi705g00012 205 CDD Ribosomal_L1 9 202 IPR028364 -
Sebi705g00012 205 SUPERFAMILY Ribosomal protein L1 3 203 IPR023674 -
Sebi705g00012 205 FunFam Ribosomal protein 65 154 - -
Sebi705g00012 205 FunFam Ribosomal protein 137 204 - -
Sebi705g00012 205 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 204 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Sebi705g00012 205 Gene3D - 65 154 IPR016095 -
Sebi705g00012 205 Gene3D - 21 203 - -
Sebi705g00012 205 Pfam Ribosomal protein L1p/L10e family 22 202 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi705g00012 Sebi-Chr705 214118 216344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi705g00012 1 200 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 90.000 1.77e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi705g00012 K02865 - gmx:100808580 370.163