Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi705g00007 ATGATAAGAAGAAGATCACCCATTATTAGTGCAGCAAACAGTAGCTGCAGGATGGGGGATAAAAAGCTCAGAAAGCATGGGAGAAACTTTAGAATGGTTTCCATTGTGATGACTATGGAAAATTACTATGATTCTAGCTGGCATCTGGGCACTACTTGGGCTCAATGCAGTGATCATTCTCCTTTTCAAGTACCTACACAAATACTGCCTCAAGTCTCTGCCTCCTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCAGTACCAATTGAAGGGGATAGAGCAGCAAGTGCTTCCAAAAGTCACAGTCAAGCAGAGAAAAGGCGCAGAGATAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTGATTCCAAAGTCTGATAAGATGGACAAGGCAGCTTTATTAGGGAGTGTGATAGACCAAGTGAAGGATCTAAAGAGAAAAGCAATGGATGTTAGCAGAGCCATCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTACGACCATGTTCAAGATGAAAGCTGCACTAAAGTGAATAAATTCAAGGACAATATTGTCATCAAAGCTTCTGTTTGCTGTGATGATAGACCAGAATTGTTCTCTGAACTCATTCAAGTCCTCAAAGGATTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGGATTAAAAGCATATTGGTGCTTTGTTCTAAGGAAAGTGAAGGGGATGTTTGCCTTAGCACTCTCAAACAGTCCCTTAAATCAGCTGTGACTAAAATTGCATCATCATCCATGACATCTAGTTGTCCTACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTTTGTACAGTGA 864 0.4167 MIRRRSPIISAANSSCRMGDKKLRKHGRNFRMVSIVMTMENYYDSSWHLGTTWAQCSDHSPFQVPTQILPQVSASSASLQFGEFHSWPVPIEGDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAITVPTEIDEVSIDYDHVQDESCTKVNKFKDNIVIKASVCCDDRPELFSELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKESEGDVCLSTLKQSLKSAVTKIASSSMTSSCPTRSKRQRFFLPSHFVQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi705g00007 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 151 IPR036638 GO:0046983
Sebi705g00007 287 Gene3D - 93 155 IPR036638 GO:0046983
Sebi705g00007 287 PANTHER TRANSCRIPTION FACTOR BHLH30 92 282 IPR045847 GO:0003700|GO:0006355
Sebi705g00007 287 CDD ACT_UUR-ACR-like 194 229 - -
Sebi705g00007 287 SMART finulus 104 153 IPR011598 GO:0046983
Sebi705g00007 287 Pfam Helix-loop-helix DNA-binding domain 101 147 IPR011598 GO:0046983
Sebi705g00007 287 CDD bHLH_AtAIG1_like 94 172 - -
Sebi705g00007 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi705g00007 Sebi-Chr705 157619 159005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi705g00007 39 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.726 8.87e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi705g00007 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi705g00007 - - gmx:100799687 455.292