Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi704g00012 ATGGAAACAAAGATGGGTTTTCTGGGCTTTGGTGGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTTGGGGAGCAGTTGCAAAATCCACAAACACTACTACCAGTGTATTGGGTCCATGAAAGTCAGGAGAACCTTGTGGAGGAAACTTTTGCTCATATGGGTGCTGATTTGGTCCATAGTATCTTTGTGGATCTTCTGCTGTATGAGCTTACAAGCCACTGAGAAGAGGAAAGAAACTCTTGCTAGCATGTGTGATGAAAGAGCTAGGATGCTTCAGGATCAGTTTAATGTGAGTATGAACCATGTTCAAGCCATGTCCATTCTCATCTCAACCTTCCATCATGCCAAAACCCCTCTGCCATTGACCAGGGTGCTCCATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGACTATTAAGAGGATGGATACCCTGGAACAGAACCCGGTTCATAAGGATGAGTATGCCCCAGAGGCATTGGAAGACATCCCCCATCAGGAAGAATATGGCTCCTGTCCATCTTTGCACAGGAAACAATTTCACATGTCATATCTGTTGATGTGCTTTCTGGAAAGGCTGTTGAAAACAAACCGTCTAGGGGTTATCCTCACATTTGCTGGTTTACAAGAGAGATCTTCCATCAATGCAACCCCAAATGAAAGGGTTCAAGCAACTGATGGGTATCTTGGTGATGGTTTCTATCATGTGAGCAGTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGCAATAGCTGCAATATCTCTAGTTTAGAGTTTTTTTATCTAGAGTTGTCAGTTCAAGCAGAACCACCATGGCCATGGTTGGCAATAACTACATCGTTTGGCATCCTTGTTATTGCACTTCTTGTTGGACACATTTTTCATGCAACTGTGAACAGAATTGCCAAAGTAGAGGATGATTACCATGAGATGATGGAGCTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACTCCAATGAATGGTGTTTTAGGGATGTTGAATATGCTTATGGACACAGATCTAGATGTAACACAACAGGAATATGTCAGAACTGCACAGGGAAGTGGAAAAGCTCTTGTGTCAATTATAAATGAGGTTTTGGACCTGGCAAAGATTGAAGCTGGTAAACTAGAGCTTGAGGCTGTGCTGTTTGACATACGGGCAATTTTGGATGATGTGTTGTCACTATTTTTTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTCTATGTCTCAGATCAGGTTCCTCAACAGCTAATTGGTGATCCAGGAAGGTTTAGACAAATAATTACAAATCTCATGGGTAACTCAATTAAGTTCACAGATAAAGGACATATCTTTGTCACTGTCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGAGACAACAGAAAGCACAGAATCTACAGATACATTAAGTGGTTTCCCAGTTGCTGATGGTCGCCTGAGCTGGAAAGGATTCCGGGCTTTCAGTCAAGAGGGACCTCTTGGTTCTTTCTCATCCTCCTCCAATGATCTCATCAATTTGATTGTATCAGTTGAGGATACAGGTGAAGGTATTCCTGAAGAAGCTCAATCCAAGATCTTCACTCCATTCATGCAGGTTGGTCCATCCATCTCCAGGAAACATGGAGGAACTGGTATTGGTCTAAGCATTAGCAAGTGTTTGGTTAGCCTCATGAATGGGGAAATTGGGTTTGTGAGCAGACCCAAGATTGGTTCCACTTTCACATTTACTGCTGTCTTCACCAATGCATGTCCCAATTCAAGTGAGTTTAAAAGTCAGCAAATCAACAACCAATCTCATCCTGCATCCTCAGAATTTCAGGGCATGACTGCATTAGTCATTGACCCCAGACCAGTTAGAGCTAAAGTGTCAAGATATCACATCCAAAGGCTTGGCATTCATGTTGAATTAGTTTCAGATTTAAGTCAAGCTGGTGCTTTGAAAAAATATGGAGCTGATGTGGTTTGTGTAAGCAGTGGAAAAGATGCTATCTCTTTGCTAAAGCCACCCCATGAGTTTGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACACGTGCAATTCGGGAGATTGAACAGAATGTGAACAGAGAAGTATCTGTTGAAGCCTTTGAGAATAATCCAAACTGGCATCTGCCCATTTTGGCTATGACTGCAGATGTGATCCAAGCTACACATGAGGAATGCCTGAAGTGTGGGATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCACGGTTTTTCCAATGA 2364 0.4247 METKMGFLGFGGKMWLKWWEKILGSSCKIHKHYYQCIGSMKVRRTLWRKLLLIWVLIWSIVSLWIFCCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHAKTPLPLTRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDEYAPEALEDIPHQEEYGSCPSLHRKQFHMSYLLMCFLERLLKTNRLGVILTFAGLQERSSINATPNERVQATDGYLGDGFYHVSSLNFGDPFRKHEMHCSNSCNISSLEFFYLELSVQAEPPWPWLAITTSFGILVIALLVGHIFHATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDLAKIEAGKLELEAVLFDIRAILDDVLSLFFEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLVEEVVHSIEVETTESTESTDTLSGFPVADGRLSWKGFRAFSQEGPLGSFSSSSNDLINLIVSVEDTGEGIPEEAQSKIFTPFMQVGPSISRKHGGTGIGLSISKCLVSLMNGEIGFVSRPKIGSTFTFTAVFTNACPNSSEFKSQQINNQSHPASSEFQGMTALVIDPRPVRAKVSRYHIQRLGIHVELVSDLSQAGALKKYGADVVCVSSGKDAISLLKPPHEFDACFMDIQMPEMDGFEATRAIREIEQNVNREVSVEAFENNPNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQ 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi704g00012 787 Pfam His Kinase A (phospho-acceptor) domain 330 395 IPR003661 GO:0000155|GO:0007165
Sebi704g00012 787 SMART HKATPase_4 442 607 IPR003594 -
Sebi704g00012 787 Pfam Response regulator receiver domain 671 781 IPR001789 GO:0000160
Sebi704g00012 787 SMART HisKA_10 330 395 IPR003661 GO:0000155|GO:0007165
Sebi704g00012 787 Gene3D - 298 393 - -
Sebi704g00012 787 Gene3D - 611 785 - -
Sebi704g00012 787 SUPERFAMILY CheY-like 671 785 IPR011006 -
Sebi704g00012 787 CDD HATPase_EvgS-ArcB-TorS-like 447 605 - -
Sebi704g00012 787 ProSiteProfiles Histidine kinase domain profile. 337 607 IPR005467 -
Sebi704g00012 787 ProSiteProfiles Response regulatory domain profile. 635 786 IPR001789 GO:0000160
Sebi704g00012 787 Gene3D - 69 120 - -
Sebi704g00012 787 Coils Coil 307 327 - -
Sebi704g00012 787 Gene3D - 394 608 IPR036890 -
Sebi704g00012 787 CDD REC_hyHK_CKI1_RcsC-like 672 782 - -
Sebi704g00012 787 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 384 602 IPR036890 -
Sebi704g00012 787 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 315 396 IPR036097 GO:0000155|GO:0007165
Sebi704g00012 787 SMART REC_2 658 782 IPR001789 GO:0000160
Sebi704g00012 787 PANTHER TWO-COMPONENT HISTIDINE KINASE 82 664 - -
Sebi704g00012 787 PRINTS Bacterial sensor protein C-terminal signature 567 585 IPR004358 GO:0016310|GO:0016772
Sebi704g00012 787 PRINTS Bacterial sensor protein C-terminal signature 532 546 IPR004358 GO:0016310|GO:0016772
Sebi704g00012 787 PRINTS Bacterial sensor protein C-terminal signature 591 604 IPR004358 GO:0016310|GO:0016772
Sebi704g00012 787 PRINTS Bacterial sensor protein C-terminal signature 550 560 IPR004358 GO:0016310|GO:0016772
Sebi704g00012 787 FunFam Histidine kinase 4 302 393 - -
Sebi704g00012 787 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 442 605 IPR003594 -
Sebi704g00012 787 CDD HisKA 330 391 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi704g00012 Sebi-Chr704 413810 419075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi704g00012 669 787 Miscellaneous Gene Families AT1G27320 78.226 9.53e-56 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi704g00012 HATPase_c 1.5e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi704g00012 K14489 - gmx:100801546 925.235