Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi701g00028 ATGGAAAGGCAACACTCTCTTCTCTTCTTGCACCATCCAACCAACACTCTCACTCCGCTGACTCATCCTCGATCAATTTCTTCCAAAAACCCTAGGGTGAAGGTGAAAAGAATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAATTCTACGAGCAGGCAAGTGACTTTCTCAAAAAGGAGAAAGGGATTGATCAAGAAAGCGAAAGAGCTTGCAATCCTCTGTGATGCAGAAGTTGGACTTGTCATATTCTCCAGCACAGGAAAGCTTTATGAATATGCAAGCAACAGCATGAAATCAGTGATCGAGAGATATAAGACCTGCAAGGAGGAACATCAACAACTAATAAATCCAGAATCTGAAGTCAAGGGATTGAGTTAG 384 0.4271 MERQHSLLFLHHPTNTLTPLTHPRSISSKNPRVKVKRMGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEYASNSMKSVIERYKTCKEEHQQLINPESEVKGLS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi701g00028 127 ProSitePatterns MADS-box domain signature. 40 94 IPR002100 GO:0003677|GO:0046983
Sebi701g00028 127 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 94 IPR002100 GO:0003677|GO:0046983
Sebi701g00028 127 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Sebi701g00028 127 PRINTS MADS domain signature 40 60 IPR002100 GO:0003677|GO:0046983
Sebi701g00028 127 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Sebi701g00028 127 FunFam MADS-box transcription factor MADS-MC 50 122 - -
Sebi701g00028 127 Gene3D - 50 124 IPR036879 GO:0003677|GO:0046983
Sebi701g00028 127 CDD MADS_MEF2_like 39 115 IPR033896 GO:0000977|GO:0045944
Sebi701g00028 127 PANTHER SERUM RESPONSE FACTOR HOMOLOG 38 115 - -
Sebi701g00028 127 SMART madsneu2 38 97 IPR002100 GO:0003677|GO:0046983
Sebi701g00028 127 SUPERFAMILY SRF-like 39 120 IPR036879 GO:0003677|GO:0046983
Sebi701g00028 127 ProSiteProfiles MADS-box domain profile. 38 98 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi701g00028 Sebi-Chr701 308252 318825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi701g00028 38 124 MADS-box Gene Family AT4G37940 83.908 3.25e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi701g00028 SRF-TF 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi701g00028 K09264 - gmx:100795778 156.762