Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi701g00019 ATGAGGAACGGGGTTTTCTTCAGAATGGCTGTACTACTGCTCTGCTTCTCGCTCGCTTCCTCTTCTGAAAATACCTCATCATTTAGTTCTTCCCCTTTGAGAAGAGGTTTAAGGGAGGCCAATTGCCCAGAATCGACGCCTAATCATTCTCCAGTCAAACTTAATACAGAAAATCCTAACCAGGTTGTGATTTACAACGGCATCGTTTCCATCAATTTATCAAGTCCAGTGGGCGATGTCATTGGAATATCACATTCGGGAATTGAAAATGTATTTGACCCTCGAGCTGACATAAATGATAGAGGGTACCTGGACGTTGTTTGGACAGAACCAGGAAAACCTGGCGCCTTTCAAAGAATCCACGGGACAAATTTCTCAGTCATAACAGCGAACGAGAATATAGTGGAAGTTTCATTTTTATCAACATGGACATTAGGCTCAAGTGTCCCCCCCATAAACATAGACAAAAGGTATATATTGAGAAGGGGCGATTCCGGGTTTTATTCTTACGTAATATTTGACCGACCAGAAGGATTCCCTGCAATGACGGTTTATCAAATTAGGATTGTTTTCAAGCTCAGCGACAAAAGGTTCCACTATATGGCTATATCAGATACTAGGCAAAGGAGCATGCCAACCGCGATTGATAGAAAAACAGGTAAAGTCCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATCCATCCAACTCAAAATTTAGGGGAGAGGTGGATGACAAATACCAATACTCGATTGAGAACGCAGACAACACTGTTAATGGCTGGATTACCACAGGTTCTAAAGAGAACGTGGGTTTCTGGATCATAACACCCAGTAATGAGTTCCGCAATGGTGGGCCCATTAAGCAAGACCTTACCTCTCATGTTGGCCCCGTTGCCCTCTCCATGTTTGCCAGCACTCATTATGCTGGCAAGGAGCTAAGCATAACATTTGAAGAAGGGGAGGCTTATAAAAAGGTTTTCGGCCCTGTTTTTATATACCTCAACTCTGCATCATATAAAGTTAATTTCCGATCTCTATGGTCTGATGCTGTACAACAGCTATCCAAAGAAGTCAAAAGCTGGCCTTATGATTTCCCCAAATCAAAAGATTTCCTTCCATCCAATCAACGAGGAGCAGTAGCAGGGCGTTTAAAAGTCCAAGAGCGGGGAGAGAGTTCTATATATGTTAAAAATGCTTACATTGGGCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTCTGGACTCGAACTGATGAAAATGGATATTTTTTGATAAAAAATGTTGTACCTGGGAAATACAACTTGTATGCATGGGTTCCTGGCTATATTGGAGATTACAAATATAATGCTACATTCACCATCACACCAGGACGGTCCATCAACATGGGCTCACTTGTATATAGTCCCCCAAGAAATGGTCCAACTCTCTGGGAGATTGGCATCCCAGATCGCTCAGCTGCAGAATTCTATGTGCCAGACCCTTACCCTAAGCTCTTGAACTACTTATACAAGAACAATCCAAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATACTGACTTATATCCAAACAATGATCTCGTTTACACAATTGGTGTTGACAACTACGAAAAGGATTGGTTTTTCGCTCATGTTACCAGGAACATAGGAAATAGTACATACCAGCCAACCACATGGAAGATTGTATTTGAGCTTGAAAATAACACATTGAAAGGAAATTACACACTACAACTGGCCCTGGCATCAGCCCATTATTCTGAAGTGCAGGTTTGGTTCAATGATCCAAGTGGTAGTTCTCCTCATTTCACAACAAAGCTAATTGGTGGAGACAATGTGATAGCAAGGCACGGCATCCATGGATTACATAGATTGTATAGCATAGATGTAGGTAGTGATCTTTTGGTAGAAGGAAATAACACCCTCTATTTGAGGCAGTCAAGAGCCCCAGGTCCTTTCCAAGGGGTTATGTATGATTATATCCGCTTAGAAAGTCCTCCAACACCACCTACTTAA 2043 0.4229 MRNGVFFRMAVLLLCFSLASSSENTSSFSSSPLRRGLREANCPESTPNHSPVKLNTENPNQVVIYNGIVSINLSSPVGDVIGISHSGIENVFDPRADINDRGYLDVVWTEPGKPGAFQRIHGTNFSVITANENIVEVSFLSTWTLGSSVPPINIDKRYILRRGDSGFYSYVIFDRPEGFPAMTVYQIRIVFKLSDKRFHYMAISDTRQRSMPTAIDRKTGKVLAYPEAVLLTHPSNSKFRGEVDDKYQYSIENADNTVNGWITTGSKENVGFWIITPSNEFRNGGPIKQDLTSHVGPVALSMFASTHYAGKELSITFEEGEAYKKVFGPVFIYLNSASYKVNFRSLWSDAVQQLSKEVKSWPYDFPKSKDFLPSNQRGAVAGRLKVQERGESSIYVKNAYIGLALPGDAGSWQTESKGYQFWTRTDENGYFLIKNVVPGKYNLYAWVPGYIGDYKYNATFTITPGRSINMGSLVYSPPRNGPTLWEIGIPDRSAAEFYVPDPYPKLLNYLYKNNPRDKFRQYGLWERYTDLYPNNDLVYTIGVDNYEKDWFFAHVTRNIGNSTYQPTTWKIVFELENNTLKGNYTLQLALASAHYSEVQVWFNDPSGSSPHFTTKLIGGDNVIARHGIHGLHRLYSIDVGSDLLVEGNNTLYLRQSRAPGPFQGVMYDYIRLESPPTPPT 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi701g00019 680 Gene3D - 372 471 - -
Sebi701g00019 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 676 - -
Sebi701g00019 680 Pfam Polysaccharide lyase family 4, domain II 397 469 IPR029413 -
Sebi701g00019 680 CDD RGL4_M 376 473 IPR029413 -
Sebi701g00019 680 SUPERFAMILY Galactose-binding domain-like 480 673 IPR008979 -
Sebi701g00019 680 Gene3D - 481 673 - -
Sebi701g00019 680 Gene3D - 55 341 IPR014718 GO:0030246
Sebi701g00019 680 SUPERFAMILY Starch-binding domain-like 372 470 IPR013784 GO:0030246
Sebi701g00019 680 SUPERFAMILY Galactose mutarotase-like 56 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Sebi701g00019 680 FunFam Rhamnogalacturonate lyase B 373 470 - -
Sebi701g00019 680 Pfam Rhamnogalacturonate lyase family 49 243 IPR010325 -
Sebi701g00019 680 Pfam Polysaccharide lyase family 4, domain III 483 672 IPR029411 -
Sebi701g00019 680 MobiDBLite consensus disorder prediction 22 55 - -
Sebi701g00019 680 CDD RGL4_C 485 673 - -
Sebi701g00019 680 CDD RGL4_N 55 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi701g00019 Sebi-Chr701 223031 227504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi701g00019 47 675 Polysaccharide Lyase AT4G38030 54.560 0.0 696