Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi701g00018 ATGAGGAAACGGGTTTTCTTGCTCAGAATGGTTGGACTGCTCTGCTTCTTGCTCTGTGCCTGTTCTGAGAATACCTCATTTAGGAGAGGTTTAAGGGGAACCAACAACCTACTCAAGTCAGCTCATTCTCCAGTCAACCTGATCACAGAGAACCCTCTTCAGGTGATGATTGAGAACGGCATCGTTTCCGTCAATTTGTCACGACCCGGGGGCTATATCCTTGGAATATCATACAAAGGAATTGACAATAACCCATGGAACAAGTTTCTCAGTCATAACAGCGGAGGAGAATATAGTGGAGGTTTCATTTTATTAACATGGACATCTTCTATGGGAGCCTCAAGTGTACCCATAAACATAGACCAAAGGTATATATTGCGAAGTGGCGATTCCGGGTTTTATTCTTACGTAATATTTGACCGACCAAAAGGATTATCTGCAGTGGAGGTTGATCAAATTAGGATTGTTTTTAAGCTTAACGAAGAGAGGTTCCACTACATGGCTATATCAGATACTATGCAAAGGAGCATGCCAGCGATGAGTGATAGAGAAAAGGGTCAACCCCTGGCATATCCTGAAGCTGTTCACTTAACCCATCCATCTAACCCACAATTTACAGGAGAGGTGGATGACAAGTACCAATACTCAATTGAGAACATAGACAACAATGTTAATGGTTGGATTGCCACAGATTCTAGACCAACTATAGGTTTTTGGATCTTAACACCTAGTAATGAATTTCGCAACTGTGGGCCCATCAAGCAAGACCTCACCTCTCATGTTGGCCCAACTGCCCTCTCCATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTCACCATGTCATTTCAAGAAGGAGAGACTTATAAAAAGGTTTTTGGCCCTGTTTTTGTCTACCTTAATTCTGCATCAAGTGATGTCCATTTCCAATCTCTATGGTCAGATGCTGTGCAACAGCTATCCAAAGAAGTCAAAAGCTGGCCTTATGATTTCCCCAAATCAAAGGATTTCTTTCCATTCAATCAACGAGGAACAGTAGCAGGACATTTACAAGTCCAAGAGCGGGGAGAGAGTTCTAAATATGCTAAAAATGCTTATGTTGGGCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAAGGAAAGCAAGGGTTATCAATTCTGGACTCGAACTGATGGAAATGGATATTTTCTGATTAAAAATGTTGTACCTGGGAAATACAACTTGTATGCATGGGTTCCTGGCTATATTGGAGATTACAAATATAATGCTATAATCACCATAACACCAGGACGTTCTATCAATTTGGGCTCACTTGTATATAGTCCTCCAAGAAATGGTCCAACTCTTTGGGAAATTGGCATCCCAGATCGCTCGGCTGCAGAATTCTATGTACCAGACCCTTACCCTGCACTCATGAACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATACTGATATGTATCCAAATCATGATCTCATTTACACGAGTGCTAATCGTCCCCAGTTCACAACAGGGGTAATAGGTGGAGATAGTGTGATAGCAAGGCATGGCATCCATGGATTGCATAGGCTGTATAGCATAGATGTAGGTAGTGATCATTTGGTGAAAGGAATGAACACCATCTATCTGAGGCAGTCAAGAGCACAAGATCCTTTCCAAGGAGTTATGTATGATTATATTCGCTTAGAAAGTCCTCCAACTCCAATTACTTGA 1719 0.4229 MRKRVFLLRMVGLLCFLLCACSENTSFRRGLRGTNNLLKSAHSPVNLITENPLQVMIENGIVSVNLSRPGGYILGISYKGIDNNPWNKFLSHNSGGEYSGGFILLTWTSSMGASSVPINIDQRYILRSGDSGFYSYVIFDRPKGLSAVEVDQIRIVFKLNEERFHYMAISDTMQRSMPAMSDREKGQPLAYPEAVHLTHPSNPQFTGEVDDKYQYSIENIDNNVNGWIATDSRPTIGFWILTPSNEFRNCGPIKQDLTSHVGPTALSMFVSTHYAGKEVTMSFQEGETYKKVFGPVFVYLNSASSDVHFQSLWSDAVQQLSKEVKSWPYDFPKSKDFFPFNQRGTVAGHLQVQERGESSKYAKNAYVGLALPGDAGSWQKESKGYQFWTRTDGNGYFLIKNVVPGKYNLYAWVPGYIGDYKYNAIITITPGRSINLGSLVYSPPRNGPTLWEIGIPDRSAAEFYVPDPYPALMNKFRQYGLWERYTDMYPNHDLIYTSANRPQFTTGVIGGDSVIARHGIHGLHRLYSIDVGSDHLVKGMNTIYLRQSRAQDPFQGVMYDYIRLESPPTPIT 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi701g00018 572 Pfam Rhamnogalacturonate lyase family 45 83 IPR010325 -
Sebi701g00018 572 Pfam Rhamnogalacturonate lyase family 106 209 IPR010325 -
Sebi701g00018 572 SUPERFAMILY Galactose mutarotase-like 49 304 IPR011013 GO:0003824|GO:0005975|GO:0030246
Sebi701g00018 572 SUPERFAMILY Galactose-binding domain-like 446 565 IPR008979 -
Sebi701g00018 572 Gene3D - 47 319 IPR014718 GO:0030246
Sebi701g00018 572 Pfam Polysaccharide lyase family 4, domain III 506 564 IPR029411 -
Sebi701g00018 572 Pfam Polysaccharide lyase family 4, domain III 449 497 IPR029411 -
Sebi701g00018 572 Gene3D - 339 437 - -
Sebi701g00018 572 CDD RGL4_N 48 306 - -
Sebi701g00018 572 FunFam Rhamnogalacturonate lyase B 339 436 - -
Sebi701g00018 572 SUPERFAMILY Starch-binding domain-like 338 437 IPR013784 GO:0030246
Sebi701g00018 572 CDD RGL4_M 342 439 IPR029413 -
Sebi701g00018 572 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Sebi701g00018 572 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 498 568 - -
Sebi701g00018 572 Pfam Polysaccharide lyase family 4, domain II 363 436 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi701g00018 Sebi-Chr701 210402 216692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi701g00018 500 567 Polysaccharide Lyase AT4G37950 58.824 8.21e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi701g00018 K18195 - gmx:100776664 665.996