LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi700g00004	ATACGTTGCCTTGATGTCTTACTTGAAGACATTGATGTAGTGAAAGCAATAACAGAATATGTCTCTTATGCTGCAATTGAGAACTTGGTGGTTGGTTCAACATCAAGGCATGGATTTATTAGGTTTAAGTCATCATCAAGTACACCAAGCAGCATATCAAAGGGGGCACCAGATTTCTGTACAGTTTATGTCATTTCTAAAGGGAAAATATCCTCAGTTCGGAATGCCTCTCGTCCAGCCCCACATACCTCCCCACTTATGAGCCATATAAATAATGAAAATAATCAGGATGGAAATCAATCTGAGATAAACTCTAGACGTATGAGTACAATGAGAGACAGGCCATCAATGAAACCTAGCAGCTGGCAGGATGAAAGTATGAATGTCCATGGTGAAAGCAGGTCTCCATTTGGAAGAGCAAGAGGCACGAGTGGAATGATATGCATGGACTTCACAGAATCAGATACAGACATATCATTTGTAAGTGAGAGGCCAAGCAGTGGCTGTTCATCTTCTGTTTATGACTGTCTTGACTCAGGTCGAACTTCACGACTGTCTACCAGTTCAGATCGTAGCTTTGGATCAAACCGGTTGGGACTCAAGTTCACTGACCCTAGTTCACCAGATCTGTCATTTTCACAAGAAAGCAATAGAACATCATTTTCATATCAATCTCAGAACATGGATGAAGTAGAAACTGATATGAGGAGGCTGAAGCTTGAGTTAAAGCAAACGATGGAAATGTACAGTACAGCATGCAGAGAAGCACTTACAGCACAACAGAAGTTAATGGAGCTGAACCACTGGAGAATAGAGGAAGAAAAAAAATTAGAAGAGGCACAATTGGCCCAGGAAGCTGCGTTAGCAATTGCAGAGAAAGAGAAAGCAAGGAGTAAGGCAGCAAATGAAGCAGCTGAAGCAGCTAAAAAAATTGCAGAGGTGGAATCAGATAGAAGAGCTAATGTTGAAGTTAAAGCTGTAAAAGAAGCAGAGGAAATGAGGAAGCTATTGGATAATCTAGCCCAAACTGATGTAAGATATAGGAAATACACTATTGAGGAGATTGAAGAAGCCACGAACTTCTTTTCTCAATCTCAGAAAATCGGTGAAGGAGGTTATGGCCCTGTTTATAAATGTTACCTTGATCACACTCCAGTTGCTGTCAAGGTTTTACGTGCAGATTCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGGTTGACATTCTGAGCTGTATGCGCCACCCAAACTTGGTGCTTCTTCTAGGGGCTTGTCCAGAATATGGTGTATTAATCTATGAATATATGGCAAAAGGAAGCCTAGATGATTGTCTCTTTAGAAAAAAGAACAGTAGGGTTCTACCCTGGCAGGTCAGGTTCCGAATTGCAGCTGAGATAGCCACTGGCTTACTATTCCTCCATCAGACCAAGCCTGATCCTTTAGTGCACCGTGATTTGAAACCAGGCAACATTTTGCTAGACCAGAATTATGTAAGCAAGATAAGTGATGTTGGGTTGGCAAGGCTTCTCCCTGCAGTAGCTGAAAATGTGACACAATGCCACATGACATCAGCAGCTGGAACTTTCTGTTACATTGATCCTGAGTATCAACAAACAGGAATGTTAGGTGTCAAGTCAGATGTTTATTCTCTTGGGATCATATTTCTACAAATATTGACTGGAAAGCCTCCAATGGGATTGGCTCACCATGCTGGACAGGCTCTAGAGGATGGCACATTTGGGGAATTGCTGGACCCTTCTGTCCCTGATTGGCCTCTTGAAGAATCCTTGTGCCTTGCAAACATTGCAATCAAATGTGCAGAACTCAGGCGAAAAGATAGGCCAGACCTTGGGGAAGTAGTGTTGCCAGAACTCAATAGACTGAGAGAATTTGCAGAAGAAAAGATGAGTCCTATCTTTTTGTTAGGAGCCTCTAGTTGCAGTGCTGCACCTTCCCCCATCCACAGTGAAGCTTCCACGCAACAGGATGTGATGAGTGATCCACTGCTTATAGGTTCTGGAAGCTCTAGAAGTGCATCAACCCCATCAACACCAACAGAAGGAAAATCCTAA	2070	0.4271	IRCLDVLLEDIDVVKAITEYVSYAAIENLVVGSTSRHGFIRFKSSSSTPSSISKGAPDFCTVYVISKGKISSVRNASRPAPHTSPLMSHINNENNQDGNQSEINSRRMSTMRDRPSMKPSSWQDESMNVHGESRSPFGRARGTSGMICMDFTESDTDISFVSERPSSGCSSSVYDCLDSGRTSRLSTSSDRSFGSNRLGLKFTDPSSPDLSFSQESNRTSFSYQSQNMDEVETDMRRLKLELKQTMEMYSTACREALTAQQKLMELNHWRIEEEKKLEEAQLAQEAALAIAEKEKARSKAANEAAEAAKKIAEVESDRRANVEVKAVKEAEEMRKLLDNLAQTDVRYRKYTIEEIEEATNFFSQSQKIGEGGYGPVYKCYLDHTPVAVKVLRADSAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGVLIYEYMAKGSLDDCLFRKKNSRVLPWQVRFRIAAEIATGLLFLHQTKPDPLVHRDLKPGNILLDQNYVSKISDVGLARLLPAVAENVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQILTGKPPMGLAHHAGQALEDGTFGELLDPSVPDWPLEESLCLANIAIKCAELRRKDRPDLGEVVLPELNRLREFAEEKMSPIFLLGASSCSAAPSPIHSEASTQQDVMSDPLLIGSGSSRSASTPSTPTEGKS	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi700g00004	689	Gene3D	Transferase(Phosphotransferase) domain 1	435	638	-	-
	Sebi700g00004	689	MobiDBLite	consensus disorder prediction	114	130	-	-
	Sebi700g00004	689	FunFam	Os07g0541700 protein	435	527	-	-
	Sebi700g00004	689	MobiDBLite	consensus disorder prediction	181	230	-	-
	Sebi700g00004	689	Coils	Coil	283	317	-	-
	Sebi700g00004	689	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	480	492	IPR008271	GO:0004672\|GO:0006468
	Sebi700g00004	689	SMART	serkin_6	362	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi700g00004	689	SUPERFAMILY	Protein kinase-like (PK-like)	345	620	IPR011009	-
	Sebi700g00004	689	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	334	434	-	-
	Sebi700g00004	689	ProSiteProfiles	Protein kinase domain profile.	362	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi700g00004	689	Pfam	Protein kinase domain	363	571	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi700g00004	689	PANTHER	OS02G0152300 PROTEIN	1	667	-	-
	Sebi700g00004	689	MobiDBLite	consensus disorder prediction	648	689	-	-
	Sebi700g00004	689	MobiDBLite	consensus disorder prediction	181	229	-	-
	Sebi700g00004	689	Gene3D	Phosphorylase Kinase; domain 1	321	434	-	-
	Sebi700g00004	689	Coils	Coil	228	248	-	-
	Sebi700g00004	689	MobiDBLite	consensus disorder prediction	74	106	-	-
	Sebi700g00004	689	MobiDBLite	consensus disorder prediction	74	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi700g00004	Sebi-Chr700	214040	217672	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi700g00004	1	642	Receptor kinase-like Gene Family	AT1G78940	60.451	0.0	750

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Sebi700g00004		Pkinase	5.8e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi700g00004	-		-	gmx:100801601	933.324